Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00838 ATGCAAATAATCTTTCCATCAATCTTATTCTCACTTCTCATTTTACTTTTCCATTTTcaatattcatcttcttcattttcccTCTATGTCGAGAAACCGGAAGATGTTATAGTCTCCTCACCTAAAGGCACTTTCACCGCGGGGTTTTATCCCGTAGGTGAAAATGCTTATTCTTTTGCCATATGGTTCACACAAAAACATAACCACCTCAACAACAATGCCACCGTTGTTTGGATGGCAAATCGTGACCAACTAGTTAATGGAAAATGTTCAACACTTTCCCTTTTGAAAAACGGAAACCTTGTCTTAACTGATGCAGGACAATTCGATGTTTGGTCCACAAATACTAACTCATCCAAACCACTTGACTTGTTTTTGTACGACACTGGAAATCTCATTCTTAAAGAGTACAACACAAATGGTTCTATTTTGTGGCAAAGCTTTGATTTTCCGACAGATACCCTCCTTCCCGATCAAAGTTTTAAGGGCTATATGAAGCTTGTTTCCTCCAAAAGTTATTACAACTATTCCTCTAGCTTCTACAAGCTTATTTTCGACAACGACAATCTTCTCCGACTTATCTATGATGTCCCTCAAGAATCGAGCGTTTATTGGCCGGATCCTTTACTTCTAGATTGGCAAGATACTAGATCCACGTACAATAGTAGTAGGATAGCAACATTAAATCGTTTGGGAAACTTCAGTTCTTCGGACGATTTCACTTTCAAAACAAGTGATTATGGAGAAGAGTTACAACGAAGAATGACTCTTGATTTTGATGGCAATGTTCGTTTTTATAGCCGAAAACACGAGCAAGAGAAATGGTCGGTATCAGGACAATTCCACCAACAACCTTGTCAAATACATGGGATTTGTGGACCTAATAGCACTTGCAGTTATGATCCAAGAACCGGTAGAAAATGTTCGTGTCTTCCAGGCTATAGCATAATTAATAACCAAGATTGGTCTCAAGGGTGCAAACCGAGCTTCCAATTTTCATGCAACAAGAAAAATTCTCGCTTCAAGTTATTACCCCATGTTGAGTTTTATAACTATGATTATGGATTCCATAAAAATTACACTTATAAACAATGTAAGCATTTGTGTTTACGATTGTGCGAATGCATAGCCTTTCAATTTCGCTATGTGAAGAACAAGGGTTTCAATAATTGCTATCCAAAGATGCGGCTACTAAATGGTCGTCGTTCAACAAAGTTCAAAGGTTCACTCTTTTTGCGATTGCCAAAAAACAATGTTGCCTTTTCTCATGCATACGATAGCTTGGTTTGTTCGAGAAACAATGGAGTAAAACAACTTGGAAGATCATACATCAATGCTGAAGAAAATGAATCGGTGAAGTTGATGCTTTGGTTTGCGAGTGGCTTGGGAGGAATCGAGGTATTGTGCTTCTTTTTAGTAGGATGgatcttatttaaaaataggaagCAATCTAGTGTTGACAATCATGGATATGTTCTCGCAGCAGCAACAGGTTTTAGGAAATTCAGTTACTCTGAATTAAAAAAAGCTACTAAAGGGTTTAGCCAAGAAATTGGAAGGGGTGCTGGAGGAATTGTGTATAAGGGTGTTTTATCTGATACTCGAGTTGCTGCGATAAAGCGTTTGCATGACGCTAATCAAGGAGAAAGTGAGTTTCTTGCCGAAGTTAGCATCATCGGAAGGCTTAATCACATGAATTTGATTGGAATGTGGGGTTATTGTGCAGAGGGAAAGCATAGGTTGTTGGTTTGTGAATACATGAAAAATGGTACTTTGGCCGATAACCTCTCATCAAATGAACTTGATTGGAGTAAGAGGTATAACATTGCTATTGGAACTGCAAAGGGTCTTGCTTATTTACACGAAGAGTGTTTGGAATGGATTTTGCATTGTGATATAAAACCTCAAAATATACTTCTTGACTCTGATTACCGGTCAAAGGTAGCAGATTTTGGTTTGTCTAAGCTATTGAATAGGGATAACCTTGATAATTCAAACTTCTCGAGGATTCGAGGGACAAGAGGTTACATGGCACCTGAATGGATTTACAATATGCAAATCACTTCAAAAGTAGATGTTTATAGCTACGGAGTTGTGGTGTTGGAGATTATTACCGGAAAGAGTCCAACAACGGGTATACAAATCAAAGATGGAGAAGAGTTGTGTCATGAGAGGTTGGTTACTTGGGTTAGGGAAAAGAGGAGAAAAGGATTAGAAGTTGGTTGTTGGGTAGAACAAATTGTTGATCCTAAATTGGGATCAAATTATGATGTAAAGAGAATGGAGACTTTGGCAAATGTTGCTTTGGATTGTGTGGTTGAAGAGAAAGATGTTAGACCCACCATGAGTCAAGTTGTTGAGAGGCTGCTAAGTCATGAACATGTTACATATGATTATTGA 2400 0.3758 MQIIFPSILFSLLILLFHFQYSSSSFSLYVEKPEDVIVSSPKGTFTAGFYPVGENAYSFAIWFTQKHNHLNNNATVVWMANRDQLVNGKCSTLSLLKNGNLVLTDAGQFDVWSTNTNSSKPLDLFLYDTGNLILKEYNTNGSILWQSFDFPTDTLLPDQSFKGYMKLVSSKSYYNYSSSFYKLIFDNDNLLRLIYDVPQESSVYWPDPLLLDWQDTRSTYNSSRIATLNRLGNFSSSDDFTFKTSDYGEELQRRMTLDFDGNVRFYSRKHEQEKWSVSGQFHQQPCQIHGICGPNSTCSYDPRTGRKCSCLPGYSIINNQDWSQGCKPSFQFSCNKKNSRFKLLPHVEFYNYDYGFHKNYTYKQCKHLCLRLCECIAFQFRYVKNKGFNNCYPKMRLLNGRRSTKFKGSLFLRLPKNNVAFSHAYDSLVCSRNNGVKQLGRSYINAEENESVKLMLWFASGLGGIEVLCFFLVGWILFKNRKQSSVDNHGYVLAAATGFRKFSYSELKKATKGFSQEIGRGAGGIVYKGVLSDTRVAAIKRLHDANQGESEFLAEVSIIGRLNHMNLIGMWGYCAEGKHRLLVCEYMKNGTLADNLSSNELDWSKRYNIAIGTAKGLAYLHEECLEWILHCDIKPQNILLDSDYRSKVADFGLSKLLNRDNLDNSNFSRIRGTRGYMAPEWIYNMQITSKVDVYSYGVVVLEIITGKSPTTGIQIKDGEELCHERLVTWVREKRRKGLEVGCWVEQIVDPKLGSNYDVKRMETLANVALDCVVEEKDVRPTMSQVVERLLSHEHVTYDY 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00838 799 SMART blect_4 28 151 IPR001480 -
Tsu03g00838 799 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 7 794 - -
Tsu03g00838 799 Pfam D-mannose binding lectin 75 162 IPR001480 -
Tsu03g00838 799 ProSiteProfiles PAN/Apple domain profile. 334 415 IPR003609 -
Tsu03g00838 799 Pfam Protein kinase domain 515 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00838 799 Gene3D Transferase(Phosphotransferase) domain 1 587 797 - -
Tsu03g00838 799 SMART serkin_6 512 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00838 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Tsu03g00838 799 PIRSF SRK 1 797 IPR024171 GO:0004674
Tsu03g00838 799 ProSitePatterns Protein kinases ATP-binding region signature. 518 540 IPR017441 GO:0005524
Tsu03g00838 799 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 206 IPR036426 -
Tsu03g00838 799 Pfam S-locus glycoprotein domain 239 315 IPR000858 GO:0048544
Tsu03g00838 799 Pfam PAN-like domain 334 392 IPR003609 -
Tsu03g00838 799 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 7 794 - -
Tsu03g00838 799 Gene3D Phosphorylase Kinase; domain 1 477 586 - -
Tsu03g00838 799 ProSiteProfiles Protein kinase domain profile. 512 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00838 799 CDD STKc_IRAK 518 789 - -
Tsu03g00838 799 ProSiteProfiles EGF-like domain profile. 282 320 IPR000742 -
Tsu03g00838 799 Gene3D - 31 149 IPR036426 -
Tsu03g00838 799 SUPERFAMILY Protein kinase-like (PK-like) 492 789 IPR011009 -
Tsu03g00838 799 CDD PAN_AP_plant 333 415 - -
Tsu03g00838 799 ProSiteProfiles Bulb-type lectin domain profile. 22 147 IPR001480 -
Tsu03g00838 799 CDD B_lectin 39 151 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00838 Tsu-Chr3 7617821 7620220 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00838 502 796 Trihelix Transcription Factor Family AT5G38560 43.189 1.23e-68 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu03g00838 Pkinase 3.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00838 - - gmx:100806357 1058.9