Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00818 ATGACCTCTTCATTTTTTTCTGACCTTCTTAATTCTCCATCCGACCAAAACCTTAGAGACACTGAAAGATCTCATCATAATCATAGTAATAATCAAGTGTTGTCGGATCAAAACGGGTCGGGTTTGCCCAAATTCAAATCCACACCTCCTCCATCTCTTCCTCTTTCTCCTACACCTCtcttttctccttcttcttacTTTTCTATCCCTCCTGGTTTCTCCCTCTCTGAGCTTCTTGATTCTCCTGTTCTCCTTAATTCTTCTCATATTCTTCCATCTCCAACAACTGGATCATTTGCTAATAATCAAGCTCTTAATAATTGGAAAAACAATTATGGTGAAAAGCAGCAGAATGTGAAAGCAGAAGATAAAACCTTCTCAAATTTCTCCTTCCAAGCTCAACCTGTGCTTCAACAATCTTCAGCCACCACAGCTCAAAACAATGGATGGAGTATGGTGAAAACAGAAAACTCTTCTTCAATGCAGAGTTTCAAACCAGAGAATAATTCTTCTACTAGTGAACAAAATAACCACAAAAGAGGTTTACAACAAACAGATAATTACAACAATTATCAAACTCAACCACAGCAGCAACAAGTTCAAACACTTAGTAGAAGATCAGATGATGGATACAATTGGAGAAAATATGGACAAAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGCTATTATAAATGCACATATCCAAATTgtccaacaaagaaaaaagttgaaaagAGAGCTATAGATGGACAAATTACTGAGATAGTTTATAAAGGTACTCATAATCATCCTAAGCCTTTGGCTAATAAAAGGAACATGAATTCAATGTCTTCCTCGTCGTCGTCCGTTGCAAATCCTCCTTCaaatagttttgaaaatgaaatgcaaATGGTTTTGGTTGCTACGCCGGAGAATTCGTCTATATCGATTGGAGATGACGATTTTGAGCAGAGTTCTCATAAATCAGGTGGAGATCATGAGTTTTGTGATGATGATCAACCCGATGCCAAAAAATGGAGAATAGAAGGTGAAAATGAGGGAATATCATCAGGAGTTGGAAATAGAACAGTGAGGGAACCTAGAGTTGTGGTTCAGACAACAAGTGACATTGATATTCTAGATGATGGGTATAGATGGAGAAAATATGGGCAGAAAGTAGTGAAGGGAAATCCAAATCCAAGGAGTTACTATAAATGTACAAACCCAGGATGTCCAGTGAGAAAACATGTGGAAAGAGCCTCACAAGATCTAAGAGCAGTCATAACAACCTATGAAGGAAAACACAACCATGATGTTCCAGCGCCACGTGGCAGTGGTAATAACCACTCTATCAACAAACCACAACCAAATATGCCAATTATGAACAATACCAATAATTCCAACAATGGATTCTTCAACCATGAAATGATGCAAAACAATGGATTTCCAATGGATTCTTACATGAATAATATGAATCAACGTGTTAATAATATTGTTAGAGGTAGAGCTAAGGAGGAGCCTGTAGAAGATAACTCCTTTTTTGAATCTTTGCTATCTTGA 1542 0.3593 MTSSFFSDLLNSPSDQNLRDTERSHHNHSNNQVLSDQNGSGLPKFKSTPPPSLPLSPTPLFSPSSYFSIPPGFSLSELLDSPVLLNSSHILPSPTTGSFANNQALNNWKNNYGEKQQNVKAEDKTFSNFSFQAQPVLQQSSATTAQNNGWSMVKTENSSSMQSFKPENNSSTSEQNNHKRGLQQTDNYNNYQTQPQQQQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVEKRAIDGQITEIVYKGTHNHPKPLANKRNMNSMSSSSSSVANPPSNSFENEMQMVLVATPENSSISIGDDDFEQSSHKSGGDHEFCDDDQPDAKKWRIEGENEGISSGVGNRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASQDLRAVITTYEGKHNHDVPAPRGSGNNHSINKPQPNMPIMNNTNNSNNGFFNHEMMQNNGFPMDSYMNNMNQRVNNIVRGRAKEEPVEDNSFFESLLS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00818 513 ProSiteProfiles WRKY domain profile. 208 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g00818 513 MobiDBLite consensus disorder prediction 155 207 - -
Tsu03g00818 513 MobiDBLite consensus disorder prediction 307 334 - -
Tsu03g00818 513 MobiDBLite consensus disorder prediction 30 45 - -
Tsu03g00818 513 MobiDBLite consensus disorder prediction 1 57 - -
Tsu03g00818 513 Pfam WRKY DNA -binding domain 375 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g00818 513 Pfam WRKY DNA -binding domain 208 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g00818 513 Gene3D WRKY domain 193 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g00818 513 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 26 498 IPR044810 GO:0003700
Tsu03g00818 513 MobiDBLite consensus disorder prediction 315 334 - -
Tsu03g00818 513 SUPERFAMILY WRKY DNA-binding domain 206 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g00818 513 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 26 498 - -
Tsu03g00818 513 SUPERFAMILY WRKY DNA-binding domain 366 434 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g00818 513 SMART WRKY_cls 374 433 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g00818 513 SMART WRKY_cls 207 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g00818 513 MobiDBLite consensus disorder prediction 155 231 - -
Tsu03g00818 513 MobiDBLite consensus disorder prediction 1 17 - -
Tsu03g00818 513 Gene3D WRKY domain 361 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g00818 513 ProSiteProfiles WRKY domain profile. 369 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00818 Tsu-Chr3 7434547 7439374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00818 42 512 WRKY Transcription Factor Family AT2G38470 47.358 1.69e-111 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu03g00818 WRKY 5.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00818 K13424 - gmx:100127421 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00818 03 7434547 7439374 Tsu03g00818 03 7434547 7439374 ECH
Tsu03g00818 03 7434547 7439374 Tsu05g02958 05 39859834 39862841 PCT