Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00788 ATGGAGATATCGTTGTTGAAAATGCTTGTTGACAGCATATCCTCATTTTTGCATTTATCGTTTTCTGGAAACATGAATTCGGAACCAGTCTCAAAATATTACCAGAAGGCAGAGGAGATACTTAAGTTGTTGAAGCCGATCATTGATGCTTTTGCTAATTCCGAGCTAGTCTCTGACGAAGTGCTTAGTAAAACATCCGAAGAACTTGGTCACGCTGTTGATGAATTAAAGGAGCATGTTGAGAATTGGCACCTATTGTCTAGCAAAGTGTACTTTGTTATGCAAGTTGAACCCTTGATATCTAGGATTCGGACTTCGGGTCTCAAGGTCTTGCAGCAGCTGAAGGCTTCAAAGCAATTTCCCAATGATGAATTGAGTTCTGAACATTTGGAGGTAGAATATTCTATTAATTTAAGAGAGGTTCTGATTGAGGCTGTGGCTCTAGAAAAGTTGAAGGAGAATGCTGAACAGACTGAAAAGACTGcagaagctgaatacattgatCAAATTATTGCTGTTATAACGCGTATGCATGAGCGCCTCGTTATGCTCAAGCAAGCCCAGAGTTCCAGTCCTGTTTCAGTACCTGCTGATTTTTGTTGTCCTCTTTCTTTAGAGTTGATGACTGATCCGGTGATCGTGGCTTCAGGGCAAACTTATGAGCGGGCTTTTATCAAGAACTGGATTGATCTTGGTCTTACAGTTTGTCCAAAGACACATCAGACTCTGGCTCACACCAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAACTGGTGTGAATCAAACAATGTGAAACTGGTTGATCCCACAAAGTCAACAACCTTAAATCAAGCATCGATCCTTCATGGGTATATGGAGTCTGGTACAACCAGGGAATCTCCTCTTTTTTCTCATTCGAGGAGTAACCTGCCATCCTCACCTGAGTCCGCTCGTTCTCGTTCTTTTAGTTCGCCAGGTAATAACATACCTTCTTCAGGTGGAATCCAGCGAGAGGCAACATCACCTGTGCACCCTCGTTCAATTTCAGAAGGTTCTTTGAGTGGCATAATTAATGGGCAATATATGGATGGTGCTAGAACATCACCCGCGGCTTTAGACGACAGGTCTGCTAGCTCAGATGCAAGCAGTATTGATTCAATTGGCCAACCATCAATATCACCATCTAGAAGAGAATCTTCCGGTGCCTTCAGCTCCGAACTATCTCAAAACCATGTTAGAGCTGTATCTGATTCTGGTGCATTTTCTGATGCAAATTATCAAGAAACACAAGGTGATGACAGCAATGCTTCTCAGCTGTCAACAAGTCCAGGCTACAGTAGAGACACTTCTGGCGAATTAAATCCAGGGCCAGATGCTGCTGGTTCTGCTCCTATGCCATCAACGCAGAGAGAACCCGAGTTCCCATCCCGATTGATGGAGGCAAGGTCTCGAAGCCAAGCTATATGGAGGAGGCCATCAGAAAGGCTTGTGCCTAGGATAATATCTTCTGCTGTTGAACCAAGAGTTGATCTTTCTGGTATTGAGGCACAGGTTCGGAGTTTAGTTGAGGGCTTGAGGAGCATTGATCTTGATATTAAGAGAGATGCAACTTCAGAAATCCGTCTTCTTGCTAAACACAATATGGATAATCGAATTGCAATTGCAAATTGTGGAGCCATTAACATATTAGTTGACTTACTCCAATCAGATGATTCAAGGATCCAGGAAAATGCTGTTACAGCACTTCTTAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCCGGTGCAATTGAACCTCTGATTCATGTTCTTGAGAACGGGAGCCCAGAAGCGAAGGAAAATTCAGCTGCCACTCTTTTCAGCTTGTCGGTGATTGAGGAAAACAAAGTTAACATAGGGAGATCTGGGGCAATTAGACCACTTGTAGATTTATTAGGGAATGGAACTCCGAGGGGAAAAAAGGATGCTGCCACTGCTTTGtttaatttgtcaatatttCACGAGAACAAGAATCGGATTGTGCAAGCTGGCGCCGTAAAACACCTTGTGGAGTTGATGGACCCAGCGGCTGGAATGGTTGACAAGGCTGTGGCTGTCTTAGCAAACCTTGCGACAATTCCAGAAGGAAGAATTGCAATCGGACAGGAAGGTGGGATTCCTGTTCTAGTTGAAGTTGTTGAGTTGGGTTCTGCTAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATCTTTGCTTACACAGTAGTAGATTCTTAAGCATGGTGCTCCAACACGGAGCCGTACCACCATTAGTAGCTTTATCACAGTCAGGCACACCAAGAGCCAAAGAAAAGGCCCAAGCTCTCCTTAATCAATTTAGAAGTCAAAGACATGGGAATTCTGGGAGGGGCTGA 2394 0.4307 MEISLLKMLVDSISSFLHLSFSGNMNSEPVSKYYQKAEEILKLLKPIIDAFANSELVSDEVLSKTSEELGHAVDELKEHVENWHLLSSKVYFVMQVEPLISRIRTSGLKVLQQLKASKQFPNDELSSEHLEVEYSINLREVLIEAVALEKLKENAEQTEKTAEAEYIDQIIAVITRMHERLVMLKQAQSSSPVSVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQTLAHTNLIPNYTVKALIANWCESNNVKLVDPTKSTTLNQASILHGYMESGTTRESPLFSHSRSNLPSSPESARSRSFSSPGNNIPSSGGIQREATSPVHPRSISEGSLSGIINGQYMDGARTSPAALDDRSASSDASSIDSIGQPSISPSRRESSGAFSSELSQNHVRAVSDSGAFSDANYQETQGDDSNASQLSTSPGYSRDTSGELNPGPDAAGSAPMPSTQREPEFPSRLMEARSRSQAIWRRPSERLVPRIISSAVEPRVDLSGIEAQVRSLVEGLRSIDLDIKRDATSEIRLLAKHNMDNRIAIANCGAINILVDLLQSDDSRIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLENGSPEAKENSAATLFSLSVIEENKVNIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRIAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSSRFLSMVLQHGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNSGRG 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00788 797 MobiDBLite consensus disorder prediction 419 475 - -
Tsu03g00788 797 MobiDBLite consensus disorder prediction 368 405 - -
Tsu03g00788 797 SUPERFAMILY RING/U-box 185 272 - -
Tsu03g00788 797 Coils Coil 138 168 - -
Tsu03g00788 797 MobiDBLite consensus disorder prediction 293 405 - -
Tsu03g00788 797 Pfam Armadillo/beta-catenin-like repeat 584 623 IPR000225 GO:0005515
Tsu03g00788 797 Pfam Armadillo/beta-catenin-like repeat 627 664 IPR000225 GO:0005515
Tsu03g00788 797 Pfam Armadillo/beta-catenin-like repeat 545 582 IPR000225 GO:0005515
Tsu03g00788 797 ProSiteProfiles U-box domain profile. 194 268 IPR003613 GO:0004842|GO:0016567
Tsu03g00788 797 SMART Ubox_2 198 261 IPR003613 GO:0004842|GO:0016567
Tsu03g00788 797 CDD RING-Ubox_PUB 199 241 IPR045210 -
Tsu03g00788 797 Pfam U-box domain 195 265 IPR003613 GO:0004842|GO:0016567
Tsu03g00788 797 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 131 - -
Tsu03g00788 797 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 136 793 - -
Tsu03g00788 797 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 677 718 IPR000225 GO:0005515
Tsu03g00788 797 MobiDBLite consensus disorder prediction 293 352 - -
Tsu03g00788 797 SMART arm_5 584 624 IPR000225 GO:0005515
Tsu03g00788 797 SMART arm_5 543 583 IPR000225 GO:0005515
Tsu03g00788 797 SMART arm_5 625 665 IPR000225 GO:0005515
Tsu03g00788 797 SMART arm_5 706 746 IPR000225 GO:0005515
Tsu03g00788 797 SMART arm_5 666 705 IPR000225 GO:0005515
Tsu03g00788 797 SUPERFAMILY ARM repeat 514 786 IPR016024 -
Tsu03g00788 797 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 274 IPR013083 -
Tsu03g00788 797 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 596 IPR000225 GO:0005515
Tsu03g00788 797 MobiDBLite consensus disorder prediction 419 445 - -
Tsu03g00788 797 Gene3D - 497 651 IPR011989 -
Tsu03g00788 797 Gene3D - 653 791 IPR011989 -
Tsu03g00788 797 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 636 678 IPR000225 GO:0005515
Tsu03g00788 797 PANTHER U BOX DOMAIN-CONTAINING 136 793 - -
Tsu03g00788 797 PANTHER U BOX DOMAIN-CONTAINING 8 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00788 Tsu-Chr3 7164079 7168877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00788 155 797 U-box Gene Family AT2G23140 61.515 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00788 - - gmx:100811250 1207.2