LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g00784	ATGGAGAATGATATGAAACCGAATGTGTTAATGGAGAAATATGAGTTAGGGAGGTTACTTGGTCAAGGAACGTTTGGAAAGGTTTACTATGCACGGAGTAAGGTAACTAACCAAAGTGTTGCCATTAAAGCGATTGACAAAGATAAGGTTATGAGAACTGGTCAAGTTGATCGAATCAAGCGTGAAATATATGTTATGAAATTGGCTAGACATCCGAATATTATACAGCTTTTCGAGGTTATGGCAACTAAGAGTAAGATTTACTTTGTTATCGAGTATGCTAAAGGTGGTGAGCTTTTCGACAAAGTGTCTAAAGGAAGACTCAAAGAAGAAGTTGCACACAGATATTTTAAGCAGTTAATTAATGCGGTCGATTTTTGTCACAGTAGAGGCGTGTATCATCGAGACATTAAGCCTGAAAACATTCTATTGGATGAAAATGGCAATCTGAAGGTTTCTGATTTTGGGTTAAGTGCTCTTGTGGAATTAAATCAACAGGATATGATTCTCCGTACGCCTTGTGGCACTCCGGCCTATGTTGCTCCGGAAGTCATTAAAAGGAAAGGGTATGATGGTGCGAAAGCCGATATTTGGTCTTGTGGAATAGTTCTATTTGTTTTATTGGCAGGTTATCTTCCTTTTCATGACTCGAATTTGATAGAGATGTATAGGAAGATAAGCAAAGCAGAATTAAAATGTCCGAGTTGGTTACGACCGGAAGTGTGCACGCTATTAAGCGAAATATTAGATCCAAAACCCGACACTAGGATTTCCATAGAAAAGATTAAGGAACatatttggtttaaaaatgGACCaaatgttagaaataaaaaaccaaaagtgGAAAATAGCAGTGTCTCTTCATCAGGTACAGTTGTTTCTGATCAAAGTAATGAAAACAGCAGTCCAGAAGCTGAAGCAAAGGAAGAGTCGGTCGTGCCGATCAGTCTAAATGCCTTTGATATCATCTCCCTTTCGGCTAGTTTTGATCTTTCTAGATTCTTTAAAGAGGATGTTCAGAAAAAAGAAGCGAGATTTAGTTCGAAACTACCTGCATCGGTCATTATCTCGAAGATGGAAGACATTGCTAAGCAACTGAGgatgaaaataaagaaaaaagctGCTGGTTTGTTGAAATTAGAGGGAGTCGATGAAGGTAGGAAAGGGGTTTTATCTATTGATGCAAAGATCTTTGAGGTTACTCCTAATTTCCATTTAGTTGAGGTGAAAAAATCGAATGGAGATACGTTGGAATATCAGAAAATATTGAAAGAGGATATTAGGCCAGGTCTTCAGGATATTGTTTGGGTGTGGCAAACTGACCAACAACTGCAATCACAACAATCAGATCAAGAGCTACCGATACATGATCAGCCGCAACAACAACCACAGCCATAA	1398	0.3727	MENDMKPNVLMEKYELGRLLGQGTFGKVYYARSKVTNQSVAIKAIDKDKVMRTGQVDRIKREIYVMKLARHPNIIQLFEVMATKSKIYFVIEYAKGGELFDKVSKGRLKEEVAHRYFKQLINAVDFCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALVELNQQDMILRTPCGTPAYVAPEVIKRKGYDGAKADIWSCGIVLFVLLAGYLPFHDSNLIEMYRKISKAELKCPSWLRPEVCTLLSEILDPKPDTRISIEKIKEHIWFKNGPNVRNKKPKVENSSVSSSGTVVSDQSNENSSPEAEAKEESVVPISLNAFDIISLSASFDLSRFFKEDVQKKEARFSSKLPASVIISKMEDIAKQLRMKIKKKAAGLLKLEGVDEGRKGVLSIDAKIFEVTPNFHLVEVKKSNGDTLEYQKILKEDIRPGLQDIVWVWQTDQQLQSQQSDQELPIHDQPQQQPQP	465

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tsu03g00784	465	PANTHER	-	5	454	-	-
Tsu03g00784	465	ProSiteProfiles	NAF domain profile.	312	336	IPR018451	GO:0007165
Tsu03g00784	465	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	132	144	IPR008271	GO:0004672\|GO:0006468
Tsu03g00784	465	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	5	454	-	-
Tsu03g00784	465	MobiDBLite	consensus disorder prediction	277	308	-	-
Tsu03g00784	465	ProSiteProfiles	Protein kinase domain profile.	14	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Tsu03g00784	465	SUPERFAMILY	Protein kinase-like (PK-like)	10	302	IPR011009	-
Tsu03g00784	465	ProSitePatterns	Protein kinases ATP-binding region signature.	20	43	IPR017441	GO:0005524
Tsu03g00784	465	SMART	serkin_6	14	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Tsu03g00784	465	Gene3D	Transferase(Phosphotransferase) domain 1	101	314	-	-

Showing 1 to 10 of 16 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g00784	Tsu-Chr3	7136311	7138994	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g00784	1	442	CBL-interacting serine-threonine protein kinases	AT5G58380	63.436	0.0	600

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Tsu03g00784		Pkinase	8.3e-75	CL0016

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g00784	-		-	gmx:100790905	685.256

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Tsu03g00784	03	7136311	7138994	Tsu03g00784	03	7136311	7138994	ECH
Tsu05g02989	05	40231889	40233283	Tsu03g00784	03	7136311	7138994	ECH
Tsu04g01522	04	15941741	15945359	Tsu03g00784	03	7136311	7138994	ECH
Tsu06g00758	06	6763209	6764567	Tsu03g00784	03	7136311	7138994	ECH
Tsu03g00784	03	7136311	7138994	Tsu05g02989	05	40231889	40233283	PCT

Showing 1 to 5 of 5 entries

Previous1Next