Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00766 ATGATGCATTTCACAGGGAGAGCATTGCAGGCTGAAAGCACGTACGCACAAGAAGATTGGAATAGCATGTGGCGAATCAATGCTCCTCCTAAAGCGAAACACCTCCTATGGCGGATTAGCAAAGGGTGCTTACCGACACGAATGCGGTTGCAAGAACGACATGTCCCATGCCCGTTAATTTGCCCACTATGTAATCAACAAAATGAGGATGATTGGCATGTGGTTTTCGGCTGTGATGTGAGTGGTCAAGCTCGGCAGGCTGCAGGTATTGGACAGCTTATGGACTCGCGATTCCAGCAGGCTAGCAGCGTCAAGGATGGTATCCAGCAGGTCTGTGCAACAACGAATAAAGATATGGCTGGATTATTTGCTATGTTATTATGGTGTTTGTGGAACAATAGAAACAATCGACTGTGGAATGACGCGAGTGAATCAGGACGAAGCATCGGACTGCAAGCTAAACATTTGTGGGAAGAATGGGCTGAGGTACAACATTGGCAGCAACGTAGGAACATTACAGAACAGCAGCAACATATTACAAATTGGCAGCCACCAACTTTTGGGTGGTTTAAATGTAACGTCGACGCCGGTTTCCATAGAGACTTCAACAAGACCAGCTCTGGTTGGTGTCTGCGAGATCATCAAGGACAGTTTGTATTAGCAGGATCGCGGTGGATGGAAGGACAATGCTCGGTAGTCGAAGGGGAAGCCATAGCTATACTTGAAGCTTTGCAGGATTTGACACAGCGAGGCTTTGATCATGTTATCTTTGAAACGGACTCTAAAAGCGTTGTCGAGGCAATTCACCATTTGCGTAGTGgTATCATGAAGAAGCTTAAGGAAATTTGCACCCTATGTGGAATAGAAGGATGTGCAATAATCTATGATAATAACAATCCGGAAGCAGTGGTTTGGCCATCGGATTTAGGTGTCAGAAGTGTGTTATCTAGGTTTGGAAATTATCCTGTGCTGGAGCGAAGCAGACATGTGATGGATCAAAGCGACTTCTTGAGGGAAAGCATTCGCAAAGCATATGAGAAGTTGAAGAAACAAAAGGAGGAAAATAGGAAGAAGGAAATGACCAATATCATGTATTATTATATTCAAACTAATGAATTTAATGGCAGTGTACTGACTAAGTATGATCTTGATGATTTTTCGTCTTTTGTTAATGAGAATTTGAAGGAAATTGATCGAAAGATGAAAGGAATGCAAATCGAAGCCCAAGAGCAGGTTGGAAATGGAGGCGAAGCTATGGATGGAACAATTGTGCATGAAAATATTGGTCATGTGCAAGGTCTATTGAATGATGGAACAATGGTGCATGAAAATATTGGTCATGTGGAAGGTCTATTGAATGGTGCAAATTTGGAGAGTAATATGGGTAATACAGCTGATGTCCAAGGTTTGGAGGCAAATTTGGAGGGTAATATAGGTAATTCAGCTGATGTCCAAGGTTTGGAGGCAAACATGAATTATGATGTGGAAAGTGATGTCCAACATCTACTTACAAACTTCTCCATGTTACCATTTCATGATGATGATATTAATGTGGACACAACTATCTTTGGTCAAATTGGTCCAAATTTCCCTTGA 1596 0.4236 MMHFTGRALQAESTYAQEDWNSMWRINAPPKAKHLLWRISKGCLPTRMRLQERHVPCPLICPLCNQQNEDDWHVVFGCDVSGQARQAAGIGQLMDSRFQQASSVKDGIQQVCATTNKDMAGLFAMLLWCLWNNRNNRLWNDASESGRSIGLQAKHLWEEWAEVQHWQQRRNITEQQQHITNWQPPTFGWFKCNVDAGFHRDFNKTSSGWCLRDHQGQFVLAGSRWMEGQCSVVEGEAIAILEALQDLTQRGFDHVIFETDSKSVVEAIHHLRSGIMKKLKEICTLCGIEGCAIIYDNNNPEAVVWPSDLGVRSVLSRFGNYPVLERSRHVMDQSDFLRESIRKAYEKLKKQKEENRKKEMTNIMYYYIQTNEFNGSVLTKYDLDDFSSFVNENLKEIDRKMKGMQIEAQEQVGNGGEAMDGTIVHENIGHVQGLLNDGTMVHENIGHVEGLLNGANLESNMGNTADVQGLEANLEGNIGNSADVQGLEANMNYDVESDVQHLLTNFSMLPFHDDDINVDTTIFGQIGPNFP 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00766 531 CDD RNase_H_like 192 269 IPR044730 -
Tsu03g00766 531 Pfam Reverse transcriptase-like 193 273 IPR002156 GO:0003676|GO:0004523
Tsu03g00766 531 SUPERFAMILY SRF-like 272 341 IPR036879 GO:0003677|GO:0046983
Tsu03g00766 531 Coils Coil 334 362 - -
Tsu03g00766 531 CDD MADS_SRF_like 272 332 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu03g00766 531 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 273 409 - -
Tsu03g00766 531 Gene3D - 189 361 IPR036397 GO:0003676
Tsu03g00766 531 SUPERFAMILY Ribonuclease H-like 189 277 IPR012337 -
Tsu03g00766 531 Pfam zinc-binding in reverse transcriptase 16 82 IPR026960 -
Tsu03g00766 531 PANTHER MADS BOX PROTEIN 273 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00766 Tsu-Chr3 6777751 6783090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00766 272 405 Type I MADS-box Gene Family AT1G65330 35.075 1.68e-21 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu03g00766 RVT_3 3.1e-16 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00766 - - cam:101496969 194.512