Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00749 ATGGGTTCTGACATTGGTATGGTGAATGGTTCGTGTGTTCATGAATGGAAGAAAGGTTGGCCTCTACGATCTGGTGGATTTGCTCAACTTTGCTTTAAGTGCGGATTTGTGGAGGAATGGAAGTGTGACATCATTGACTCATTATCTGCCTATGAGAATTCAATTTTCTGTAATAAATTCCACCGTCAACAAACTGGTTGGCGTGAGTGTAACTTTTGCAACAAGCCTATCCACTGTGGGTGCGTAGTATCTAGATCTCTGTTCGAGTATCTTGATTTCGGTGGTATAGGTTGTGTTAGCTGTGTAAATACTTCCCAACATAATATGATTCGTAATACTGAAAATCCTAAATGGCCCGTTTCATTGATTCAAAATAATGCAAGGGATATGAATTCTGCTCATTTTGACGGCAGACTGTATGCGAATAATGTTGATGAAGGAAAGCTTATGCAATTATGCAGAGTCGTTGAAGCTAGTGAATCCATCCATATGAATCATGCTCCGAGAGAGAACATTATTACATCTAACGGGAAAAACCATCAGGATGTTAAGCCTTCATTCAGGGAAGGGGATACTAGTTTTTCAAATGTGATTAAACCGTCTATTCAATCATTAACTTTTTCTACATTAGAAAATAATAGACCAACATGGGAGATGAAAAACATGCACGAATCAAATGCAAAGCCGTCTTTGAATATGTGTTTGGGGAATCCGTCAGGGAACAGCTCTTTCCTTCCTTCTGCTGGAGAGATTATAGAAGGAAGACTTGAAGGAAAAGTGTCTCCTCCCTTTCATCAAGGGCCGAGATCTCGCCCTATACTTCCCAAAGTGTTGAAGACTGGCCTTACCATGAATGGAGAAACTGAAAAAGGGACAACTTCTCAACCACGTATTGCCCGGCCTCCTGGTGATGGGAGGGGCAAGAATCAGTTACTTCCTAGATATTGGCCTAGGATTACGGATCAGGAGCTGGAGCGTTTGTCTGGAGATTTGAAATCCACTGTAGTTCCATTGTTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCCGAGTCTTATTTTCCTCACATTTCACATTCTGAAGGCCTTCCTTTGCGAGTCCAAGATGTAAAGGGGAATGAATGGACTTTCCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAAGCCATGGAGTTACGTGCTGGTGATACCGTTACATTTAGTCGGATAGACCCTGGCGGAAAACTTGTTATGGGTTTCAGAAAGTCATCTAATACCACAGATACACATGATGCTTCTCCATCTGCACATTCTAACGGCGTTTCTGCAAAGGGAGCCACCTTTTCTGGTGGAACTGATAATCTTCCATCGAGAAGTAATTGTGGTGATTTTCTCCGTTCACCAAAAGGGAACGGGGAACTTCACTTAAATGGACATCCGGAATCTCCGCATTTGGGTACCGGAGCTGCTAGTTTGCTTAAAACTGGAAACTGCGAGATGACAAACAATAATTCACTGGACCAAAAAATTTCAGCTTTAGAGAAGAAGAGGACTCGAAATATTGGCCTTAAAAGTAAGAGATTGGTCATTGGTAATGATGATGCTATTGAGTTGAGACTTACATGGGAAGAAGCGCAGGACTTGCTTCGTCCACCCCCTAGCGTCAAGCCAAGCATTGTCACAATTGAAGACCAAgtatttgaagaatatgatGAGCCCCCGGTTTTTGGAAAGAGAACAATATTCAGCGCCTCTTCATCTGGGATGAAGGAACAATGGGCTCAATGTGATGATTGTTCTAAATGGAGAAAGTTGCCGGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTCTGAAAATGTTTGGGATACAAGCAGATCTTCATGTTCTGCACCAGAGGAGCTGAGCTCAAGGGAATTAGAAAATCTTATGAAAACCAGCAAAGATTTTAAGAAGCGACGGATTGTAGAAAACAACAAGTTGATCCAAGAACATGAGCCTTCTGGCTTAGACGCTCTCGCCAGTTTAGCTGTCTTAGGAGAAAATCTCATTGACCCTACTGATTCCTCAGCCGGAGCCACCACTAAACATCCTAGACACCGCCCGGGCTGTTCTTGTATTGTGTGCATTCAGCCCCCGAGTGGAAAAGGAAGACACAAGCCAACATGTACTTGCAATGTGTGCACGACCGTGAAGCGTCGGTTCAAAACTCTTATGCTACGCAAGAAGAAACGTCAGTCGGAGCGCGAAGCAGATGCCGCAGCCAAGAAAGATCAAATTCGCAAAGGAGACGACAATTTAGATACCAATGGCGGAGCAACATCAAGAGATGATGCAAATCCTTTGGAAAAAGAGGGAGGTTTAAATAGAAGTCAAACCGAGGTTGGCGAGTCCAGTGCTGGAAAGATAGATCTGAATAGTGATCCAAACCGCGAAGACTCACAATTGGATAATATCGCAAAACTTCGCTGTCAACTATCGGAACGTATGAATATGAGCCAAAATGGTGGTCTAAGAACCTTCAATACTGAAATGCCGGAAGGTCAGCATTCTTCTTTGGTCACTCAATCTGAAGATAAGAGACACTTATCTGATGATAGAAGCATTGCATCCATTATCTTgaacaaagaaagaagagaTGAAGTATACAATCAATcaaatgaaaatcaaaacaatatgtcttaa 2733 0.4215 MGSDIGMVNGSCVHEWKKGWPLRSGGFAQLCFKCGFVEEWKCDIIDSLSAYENSIFCNKFHRQQTGWRECNFCNKPIHCGCVVSRSLFEYLDFGGIGCVSCVNTSQHNMIRNTENPKWPVSLIQNNARDMNSAHFDGRLYANNVDEGKLMQLCRVVEASESIHMNHAPRENIITSNGKNHQDVKPSFREGDTSFSNVIKPSIQSLTFSTLENNRPTWEMKNMHESNAKPSLNMCLGNPSGNSSFLPSAGEIIEGRLEGKVSPPFHQGPRSRPILPKVLKTGLTMNGETEKGTTSQPRIARPPGDGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAESYFPHISHSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMELRAGDTVTFSRIDPGGKLVMGFRKSSNTTDTHDASPSAHSNGVSAKGATFSGGTDNLPSRSNCGDFLRSPKGNGELHLNGHPESPHLGTGAASLLKTGNCEMTNNNSLDQKISALEKKRTRNIGLKSKRLVIGNDDAIELRLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSASSSGMKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTSRSSCSAPEELSSRELENLMKTSKDFKKRRIVENNKLIQEHEPSGLDALASLAVLGENLIDPTDSSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCTTVKRRFKTLMLRKKKRQSEREADAAAKKDQIRKGDDNLDTNGGATSRDDANPLEKEGGLNRSQTEVGESSAGKIDLNSDPNREDSQLDNIAKLRCQLSERMNMSQNGGLRTFNTEMPEGQHSSLVTQSEDKRHLSDDRSIASIILNKERRDEVYNQSNENQNNMS 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00749 910 MobiDBLite consensus disorder prediction 437 477 - -
Tsu03g00749 910 Pfam B3 DNA binding domain 339 438 IPR003340 GO:0003677
Tsu03g00749 910 MobiDBLite consensus disorder prediction 755 832 - -
Tsu03g00749 910 MobiDBLite consensus disorder prediction 851 869 - -
Tsu03g00749 910 MobiDBLite consensus disorder prediction 285 311 - -
Tsu03g00749 910 ProSiteProfiles Zinc finger CW-type profile. 603 653 IPR011124 GO:0008270
Tsu03g00749 910 Gene3D - 317 444 IPR015300 -
Tsu03g00749 910 SUPERFAMILY DNA-binding pseudobarrel domain 337 440 IPR015300 -
Tsu03g00749 910 Gene3D - 598 652 - -
Tsu03g00749 910 SMART B3_2 339 439 IPR003340 GO:0003677
Tsu03g00749 910 Pfam CW-type Zinc Finger 608 650 IPR011124 GO:0008270
Tsu03g00749 910 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 851 - -
Tsu03g00749 910 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
Tsu03g00749 910 MobiDBLite consensus disorder prediction 807 821 - -
Tsu03g00749 910 CDD B3_DNA 337 438 IPR003340 GO:0003677
Tsu03g00749 910 MobiDBLite consensus disorder prediction 437 506 - -
Tsu03g00749 910 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 851 - -
Tsu03g00749 910 MobiDBLite consensus disorder prediction 759 781 - -
Tsu03g00749 910 MobiDBLite consensus disorder prediction 851 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00749 Tsu-Chr3 6653231 6660183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00749 1 837 B3 DNA Binding Superfamily AT2G30470 48.521 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu03g00749 B3 1.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00749 - - gmx:100789848 1382.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00749 03 6653231 6660183 Tsu03g00749 03 6653231 6660183 ECH
Tsu03g00749 03 6653231 6660183 Tsu05g03006 05 40403091 40408475 PCT