Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00745 ATGTCGTATGTTCCTCCACACTTAAGAAACGCCAGTTcaaccaccacaaccaccactACCACCGCCGTAACTAGACCTTCATCAACCGGAACCCTAGACAACATcaaccaccaccatcatcataacaacaacaacaacctcgCATTCTCAAACTCACATTCCAATACTCCTTCTCTCTTCAATGTCTCTCGCCGTACCTCCGCCGCTCCTCCGCAGTCGCGTATTACCGCCGTTCCTGATACTGTTTTCCCTAACTGGCAACCTTCTGAACGTGTTTCTCGCATGAACCCTGATATGATTGAAGAGGTCCGCTTACGGCTTAATCTCGATGTTACTGTTTCGTCCGACTCTCCTGCTGCACCTGGACCTATAGAATCGTTTAATGATATGTGTTTGAATCCAAGTATCATGAAGGACATTGCTTATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCTATTGCTCTCAGTGGAAGGGATCTTTTGGGTTGTGCTGAAACTGGTAGTGGGAAGACCGCAGCCTTCACGATTCCCATGATACAGCATTGCTTGGCCCAGCCTCCCATTCGGCGAGGAGATGGTCCCCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAAGAGGTCCAAGCTTTTAGCAGGTCTCTCGAGTCATTAAAAACTGCCATTGTTGTAGGTGGAACTAACATTGAAAAGCAGAGGTCTGAACTAAGAGCAGGAGTTGAAATAGCAGTTGCCACCCCTGGAAGATTCATTGACCACTTACAACAAGGCAACACTTCCCTCTCAAGAATTTCTTATGTTGTTCTAGACGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGGGAGATAATGAGAAGTCTTCCAGAGAAGCATCAAACATTGCTGTTTAGTGCAACTATGCCTGTGGAGATTGAAGCATTGGCAAATgAGTACTTAACTAACCCCGTGCAAGTTAAGGTGGGAAAAGTGAGCAGTCCAACAACTAATGTTTCACAAACTCTTGTAAAGGTTTCTGAAAATGAGAAGATTGATCGGCTCCTAGATTTGCTTGTAGAGGAGGCATCACAAGCTGAAAAGTGTGGCCATCCATTTCCATTGACAATTGTGTTTGTTGAGCGAAAGACAAGGTGCGATGAAGTTGCTGAAGCATTGGTTGCCCAAGGATTATCTGCAGTTTCTCTGCATGGTGGCCGCAGTCAGAGTGAAAGGGAGGCTGCCTTGCATGACTTCCGGAGTAGCTCAACCAGCATTTTGGTTGCCACCGATGTTGCATCTCGGGGTTTGGATGTCACTGGAGTGTCACACGTCATAAATCTTGATCTTCCAAAGACCACAGAAGATTATATACACCGGATTGGAAGGACAGGGCGAGCAGGATCAACTGGCATTGCCACTTCCTTTTACACTGATCGTGACATGTTCCTTGTGACAAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGGAACGCTGTGGCATTTGCTACTGGAAAGGTTGCCAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACACAAAGAGGCAAACATTGCTTTATCTAGACACCTTGGATCGGGAGCAGCTTCAATTAACATTGAAGATAAGTATAGATTCATGATTACTGCCACAAACAGTAAAAGAGAGGGCGCAGCAGATAGTGCATGGGATGATTGA 1713 0.4407 MSYVPPHLRNASSTTTTTTTTAVTRPSSTGTLDNINHHHHHNNNNNLAFSNSHSNTPSLFNVSRRTSAAPPQSRITAVPDTVFPNWQPSERVSRMNPDMIEEVRLRLNLDVTVSSDSPAAPGPIESFNDMCLNPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFSATMPVEIEALANEYLTNPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVARRKEKEAAAAHKEANIALSRHLGSGAASINIEDKYRFMITATNSKREGAADSAWDD 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00745 570 Gene3D - 338 531 IPR027417 -
Tsu03g00745 570 Gene3D - 86 336 IPR027417 -
Tsu03g00745 570 MobiDBLite consensus disorder prediction 1 74 - -
Tsu03g00745 570 CDD SF2_C_DEAD 344 482 - -
Tsu03g00745 570 Coils Coil 211 231 - -
Tsu03g00745 570 MobiDBLite consensus disorder prediction 1 33 - -
Tsu03g00745 570 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 332 IPR014001 -
Tsu03g00745 570 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 27 535 - -
Tsu03g00745 570 Pfam Helicase conserved C-terminal domain 356 473 IPR001650 -
Tsu03g00745 570 CDD DEADc 136 333 - -
Tsu03g00745 570 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Tsu03g00745 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 493 IPR027417 -
Tsu03g00745 570 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 514 IPR001650 -
Tsu03g00745 570 SMART helicmild6 392 473 IPR001650 -
Tsu03g00745 570 Pfam DEAD/DEAH box helicase 149 319 IPR011545 GO:0003676|GO:0005524
Tsu03g00745 570 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 278 286 IPR000629 -
Tsu03g00745 570 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 535 - -
Tsu03g00745 570 MobiDBLite consensus disorder prediction 41 74 - -
Tsu03g00745 570 SMART ultradead3 144 347 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00745 Tsu-Chr3 6619388 6626508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00745 125 495 Eukaryotic Initiation Factors Gene Family AT1G72730 35.467 2.04e-69 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00745 K12823 - gmx:100818387 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00745 03 6619388 6626508 Tsu03g00745 03 6619388 6626508 ECH