Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00739 ATGATCCCACAACAAGAATCTGAGTTTGATATCGGTTATCTCAAACCATATTACGGAAAGCTATTTCCTTATGCTGATATGTTTAAATGGATGTCTTACGGCCACGATGGGAAACATCCTGGTTGTGATCAGTCCTACTTTGGAAGGAGGGAATTTTCCTACACTCTGAAAGGTGATTTTTATCTGCGCTTCCAATCTTTCAACAGTGCACTTGAGCTCGAAAACTCCATCAAAGAAAAATGCCCTTTAAAGATTGACATTGGACCTGTCTACACAGTCGATCCAGCAAAAAGGCATGCCTATGCACAGGGTGATAATAAAGTCTTCACTCCAGTTGAGAGGGAGTTAATTTTTGATATAGATATGACAGATTATGATGATGTCAGATACTGCTGCAAGGGTGCTGATGTTTGCTTGGATTGCTGGCCATTGATGACCATAGCCATCAAAGTGATTGATGCTTCCTTAAGAGATGACTTTGGTTTTAAGCACATACTCTGGGTCTATAGTGGACGCAGAGGTGTTCATTGTTGGGTGTGTGATGGGAAGGCAAGAAGGTTGACTAATGAGCAAAGAGCTTCTATTGCTGACTATTTTCGTGTTTACAAGGGCAATGAAAATAGTCATAAGAAGGTTTCCTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCGACATCATACACCAACGTTCTCAAGGActattttgagaaaatattgCTTACAAATCAAAACTTACTTGCTACTGAGGAGAGATATGAGAAGATCCTAAGCATGATTCCTGATGAATCTATTGCTTCTGAACTTAGGGGTAGATGGCAAGATAATAATAGGAGGTCCTCTAgtgcaaaagaaaatattaatgttgtgCGATGGGAACAGTGCAAGCAGCTGCTGCAATCTGGAAAACATAAGGCACAAGGGTTGCGTAGATGCGTTGAAGAGATTGTCTTCTTCTTTACTTACCCCAGGCTAGATATGGAGGTTTCAAAACATATGAATCATTTGCTTAAAGCACCTTTCTGTGTACATCCAAAAACAGGCCGTGTCTGTGTCCCTATTGACCCAAATCGGTGTGACGAGTTTGATCCTACTACAGTACCCACCCTTTTCCAGCTACTAGAAGAGCTTAATAATGAAGGCTTGAGAGCTGATGTTAATGGTGCAGAATGGAGTGGAACTTCACTTGGAAGTGCCGTCACACTTTTCAGATCATCATTCTTAGAACCTTTGCTAAAAGCCTGCAAGGAGGAGATAGAAAGATCCTATAGTTTAAAGTTGCAGCAGTCAAAGAACTCCATAGGTTGGTAA 1308 0.4021 MIPQQESEFDIGYLKPYYGKLFPYADMFKWMSYGHDGKHPGCDQSYFGRREFSYTLKGDFYLRFQSFNSALELENSIKEKCPLKIDIGPVYTVDPAKRHAYAQGDNKVFTPVERELIFDIDMTDYDDVRYCCKGADVCLDCWPLMTIAIKVIDASLRDDFGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRASIADYFRVYKGNENSHKKVSLMGAALHPFLATSYTNVLKDYFEKILLTNQNLLATEERYEKILSMIPDESIASELRGRWQDNNRRSSSAKENINVVRWEQCKQLLQSGKHKAQGLRRCVEEIVFFFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNRCDEFDPTTVPTLFQLLEELNNEGLRADVNGAEWSGTSLGSAVTLFRSSFLEPLLKACKEEIERSYSLKLQQSKNSIGW 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00739 435 SUPERFAMILY Prim-pol domain 9 378 - -
Tsu03g00739 435 PANTHER DNA PRIMASE SMALL SUBUNIT 20 435 IPR014052 GO:0003896|GO:0006269
Tsu03g00739 435 Pfam DNA primase small subunit 118 354 IPR002755 GO:0003896|GO:0006269
Tsu03g00739 435 CDD AE_Prim_S 38 363 IPR014052 GO:0003896|GO:0006269
Tsu03g00739 435 PANTHER DNA PRIMASE 20 435 - -
Tsu03g00739 435 TIGRFAM primase_sml: putative DNA primase, eukaryotic-type, small subunit 15 371 IPR014052 GO:0003896|GO:0006269
Tsu03g00739 435 Gene3D DNA primase, PRIM domain 2 416 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00739 3 435 Core DNA Replication Machinery Family AT5G41880 66.513 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00739 K02684 - gmx:100780574 780.4