LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g00735	ATGTGTCTTTTAAAGGGTTGTTGCAAACATGTAATTGTTTCCATCATCTTATGGTTCTGCTGCTGCTTGATTCCGGCTGCTGCCCAAGTTATCAATGTCACCGACCCTACTGAAGTGCTAGCATTGAGAAGCATACATGAAAGTTTGTTTGATCCAAATGGACATTTGAGCAATTGGAATAGTGATGAAGACCCATGCCTATCTAATTGGACAGGAGTTGTGTGTTCTAATCAAACAATTGAAGAAAACTTTCTACATGTTGTAGAATTGGAACTACTGAAATTGAACTTGTCTGGAAAATTGGCACCAGATATTGGCAACTTAGcttatttgaaaatattGAATTTCATGTGGAACAACATAAGTGGAGAAATTCCGGTGGAAATTGGCAATATCACATCTTTGGAACTAATATTCCTAAGTGGAAATGAATTAACAGGAGCAGTGCCAGAGCAACTTGGGTTTCTTCCAAACCTACGTATAATGCAAattgatgataacaaattatCAGGACCTATACCTTTATCATttgcaaatttgaacaaaacaaaGCACTTTCACATGAACAATAATTCCCTTAGTGGGCAAATTCCAGCAGAACTTTCCAAATTGCCAAACCTTATTCATCTGCTTCTGGACAACAATAATTTCTCAGGAATTCTTCCACCTGAGCTATCCAAAACGCCAAACTTGACTATACTCCAACTCGACAACAATAACTTTGGCGGAAATAGCATTCCAGATAGTTATGCCAACATGTCAAAACTGGTGAAGTTGAGCCTTAGGAATTGCAACTTGCGAGGACCGATTCCTGATTTAAGCCAGATACCACACCTCCTTTATATTGATCTCAGCTTCAATCAGTTGAATGAATCAATTCCTCCTAATAAGCTTGGTGAAAATATGACAACCATTATTTTATCGAACAACAATCTTACTGGAACTATTCCATCCAATTTTTCTCGTCTTCCACGTCTCCAGAAATTGTCACTTGCAAACAATTTATTGAGTGGGAGTGTTCCTTCCACAATTTGGCAGAACAAGATTTCAAATGCTGCAGAAAGATTGCTATTAGAATTGCAAAATAACCAATTTATAAGCATATCAGGCAGTACCAACCTTCCGCTAAATGTTACACTATTGCTTGATGGGAATCCCCTATGTTCAGATAACACACTGAATCAGTTCTGTAAAGTTGAAGGAGCTAGAAGTGAAACAAATGGCACATCTCCAACAAACTTCAGTGACTCTTGTCCAAATCAAAGATGTCCACCTCCTTATGAATTCTATGTGAATTGTTTCTGCGTGGCTCCATTGATAATTGGTTATCGATTGAGAAGTCCTGGTTTTTCAGATTTTCCGCCATATTTCAATACATTTGAGGAATACTTGACTTCAAATCTTAAGTTACAAGCCAATCAGATAAGCTATACTTTTGAGTGGCAAGTAGGACCTCGAGTTTTAATGATCTTGAAGATTTTTCCTGAATATGTTGATAAAAATAGTTCTCATACTTTCAATTCAAGTGAGATCCAACGGATCAGAAACATGTTCACTGGATGGGTTATTCCTAATCGTGATTTGTTTGGGCCTTATGACCTGATGGACCTGGTTCCTTATAATAATGGGACTAACACCTCTTCAAAATCAGACATAAGCACGGGTGCTTTGGTTGGCATAATCTTAGGCTCAATTGCATGTGTAATATCGTTGTCTGctgttttcattcttttaatATTAAGAATAAGATTGAGACGTCATGATGCAGTTTCCAAGCCACGTCATTCATCTAAGATCTCAATACAAATTGATGGCACAAGAGCCTTTACTTATGAAGAGTTGTCCGCTGCTACAAACAATTTTGACAACAATGCTCAAATTGGACAAGGAGGCTATgggaaggtttataaaggtattCTTTCTAATGGCACTGTGGTAGCCATAAAGCGTGCACAACAAGGATCGTTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCAATACTATCAAGGTTACATCACCGTAACCTTGTGTCTCTGGTTGGATACTGTGATGAAGAAGGTGAACAgATGCTGGTTTACGAATTTATGTCAAATGGCACACTAAGAGACCACCTTTCTGTTACATCAGAAAAGCCTCTGAGTTTTGCTATGAGATTGAAGATAGCACTAGAGTCAGCTAAAGGTCTCATGTATCTACACACAGAAGCTGATCCTCCAATATTTCACCGAGATGTTAAGTCAAGCAACATATTGTTGGACTCTAAGTTCACTGCAAAAGTTGCAGATTTTGGACTTTCACGGCTTGCCCCAGTTCCAGATATTCAAGGAATTATACCTGGTCATGTATCCACAGTGGTAAAGGGGACCCCGGGTTACCTTGATCCGGAGTACTTCTTAACTCACACGTTGACCGACAAGAGTGATGTTTACAGTCTTGGTGTTGTATTTCTTGAACTTTTGACTGGGATGCACCCTATTTCACATGGCAAAAATATTGTTAGAGAGGTTAATGTTGCATACGAATCGGGTGAGATTTCTTCAGTTATTGATGAACGCATGGGATCTTATCCATCTGATCATGCTGAGAAGTTTTTAAATTTGGCCCTAAAGTGTTCCGAAGACGAACCAGAACCACGTCCTAAAATGGCAGCAGTGGTTAGAGAGCTTGAAAACATTTGTTCTATGATGTCAGATTCAGATACCACGAGAGGTACATCTACAAGCACCGATTCTCGCAAAACAGCCAGCTTTCTAGGCAGTACATCTTCTTCATCCTCAGTCATAAAGACTCCTTCTGTATCAAGATATGCAGCGCTCACAGGAGCTCCACCAACCCAGCATATTAAGGCTTAA	2856	0.3824	MCLLKGCCKHVIVSIILWFCCCLIPAAAQVINVTDPTEVLALRSIHESLFDPNGHLSNWNSDEDPCLSNWTGVVCSNQTIEENFLHVVELELLKLNLSGKLAPDIGNLAYLKILNFMWNNISGEIPVEIGNITSLELIFLSGNELTGAVPEQLGFLPNLRIMQIDDNKLSGPIPLSFANLNKTKHFHMNNNSLSGQIPAELSKLPNLIHLLLDNNNFSGILPPELSKTPNLTILQLDNNNFGGNSIPDSYANMSKLVKLSLRNCNLRGPIPDLSQIPHLLYIDLSFNQLNESIPPNKLGENMTTIILSNNNLTGTIPSNFSRLPRLQKLSLANNLLSGSVPSTIWQNKISNAAERLLLELQNNQFISISGSTNLPLNVTLLLDGNPLCSDNTLNQFCKVEGARSETNGTSPTNFSDSCPNQRCPPPYEFYVNCFCVAPLIIGYRLRSPGFSDFPPYFNTFEEYLTSNLKLQANQISYTFEWQVGPRVLMILKIFPEYVDKNSSHTFNSSEIQRIRNMFTGWVIPNRDLFGPYDLMDLVPYNNGTNTSSKSDISTGALVGIILGSIACVISLSAVFILLILRIRLRRHDAVSKPRHSSKISIQIDGTRAFTYEELSAATNNFDNNAQIGQGGYGKVYKGILSNGTVVAIKRAQQGSLQGEKEFLTEISILSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNGTLRDHLSVTSEKPLSFAMRLKIALESAKGLMYLHTEADPPIFHRDVKSSNILLDSKFTAKVADFGLSRLAPVPDIQGIIPGHVSTVVKGTPGYLDPEYFLTHTLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNVAYESGEISSVIDERMGSYPSDHAEKFLNLALKCSEDEPEPRPKMAAVVRELENICSMMSDSDTTRGTSTSTDSRKTASFLGSTSSSSSVIKTPSVSRYAALTGAPPTQHIKA	951

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g00735	951	SMART	serkin_6	621	893	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00735	951	Gene3D	Ribonuclease Inhibitor	296	416	IPR032675	-
	Tsu03g00735	951	ProSiteProfiles	Protein kinase domain profile.	621	893	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00735	951	Gene3D	Phosphorylase Kinase; domain 1	591	696	-	-
	Tsu03g00735	951	SUPERFAMILY	L domain-like	61	404	-	-
	Tsu03g00735	951	CDD	STKc_IRAK	627	893	-	-
	Tsu03g00735	951	PANTHER	LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN	13	925	-	-
	Tsu03g00735	951	Pfam	Leucine rich repeat	301	345	IPR001611	GO:0005515
	Tsu03g00735	951	Pfam	Leucine rich repeat N-terminal domain	37	76	IPR013210	-
	Tsu03g00735	951	Gene3D	Ribonuclease Inhibitor	192	295	IPR032675	-
	Tsu03g00735	951	Gene3D	Ribonuclease Inhibitor	36	191	IPR032675	-
	Tsu03g00735	951	Gene3D	Transferase(Phosphotransferase) domain 1	697	915	-	-
	Tsu03g00735	951	MobiDBLite	consensus disorder prediction	897	930	-	-
	Tsu03g00735	951	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	13	925	-	-
	Tsu03g00735	951	ProSitePatterns	Protein kinases ATP-binding region signature.	627	649	IPR017441	GO:0005524
	Tsu03g00735	951	Pfam	Protein kinase domain	623	888	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00735	951	SUPERFAMILY	Protein kinase-like (PK-like)	595	890	IPR011009	-
	Tsu03g00735	951	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	741	753	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g00735	Tsu-Chr3	6531200	6546977	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g00735	14	902	Receptor kinase-like Gene Family	AT5G01950	54.767	0.0	951

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Tsu03g00735		Pkinase	5.2e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g00735	-		-	gmx:100786467	1305.43