Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00700 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACAACATGAAGGAGGAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGTGCGGGGCCCTTAGTGTCCCTACCGACCGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAgGTATCTGCCACAACTAACCGAGAAATTGATGGGCACATACCAAATTACCCTAGCTTGCCGCCTCAGTTGGTTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACGGATGAAGTATATGCTCAAATGACGCTACAGCCGTTGACTCCGGAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGCATTCCAAGTAAGCAGCCCTCGAACTATTTTTGCAAGACTTTAACGGCTAGTGACACTAGCACACATGGAGGATTCTCTGTTCCTCGCCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCACAGCAACCACCAGCACAAGAACTAATTGCTAGGGATCTCCATGACGTTGAATGGAAGTTTCGTCATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGGCTTGTTGCAGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTCCTTTTGGGAATACGTCGAGCCAATCGACCGCAAACTGTGATGCCATCATCAGTTCTGTCCAGTGATAGTATGCACATTGGACTTCTTGCGGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACCGTCTTCTATAATCCAAGGGCTAGTCCATCCGAGTTTGTCATACCACTTTCGAAATATATCAAAGCTGTGTACCATACACGTATCTCTGTTGGTATGCGCTTCAGGATGCTTTTCGAGACTGAAGAGTCAAGTGTCCGCAGGTACATGGGTACAATAACCGGCATAAGTGATCTGGATGGTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGGGTATCATTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCATCGTTGTTTCCCCTCAGATTGAAACGCCCGTGGCATCCTGGCACCTCATCTTTACTTGATGGAAGAGATGACGCAAATGGCCTAATGTGGATGAGAGGTGGACCTGCAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGCACCTCTAGTTTGTTGCCGTGGATGCAGCAGAGACTAGATCCAACTTTACTTGGAAGCGATCAGAATCAACAATACCAAGCAATGTTGGCAGCTGGATTGCAGAACATGGGTAGTGGTGGATATCTCATGAGGCCACAAATGATGAATTTTCAACAACAGCCTATCAATTACCTTCAATCAGGAAACAGTAATTCGCCTTTGCAACTTCAGCAGCCTCAAATAATTCCACAAACAGTTAATATGATGCAGCAGCCACAAGCCCAAGTACTTACAGAAAACTTGTCGCAGCTTCTTCAGAAACCAAATAACAATCAAGAAGTGCAAGCTCAACAGCAGCAACATAGTTATCAAGATACGCTTCTAATTCAAAATGATCAGCTCCATCAGAGACAACAATCGAACTTGCCGTCACCATCGTATTCAAAACCAGATTTCCTTGAGTCAAACATAAAGTTCAGTGCTTCAGTTCCGTCCGGACAAAACATGCTTGGTTCGCTTTGCACTGAAGGAACTGGTAATCTCTTGAATCTATCGACTCTATCCAGAAGTGGTCAGTCGTTGATGACTGAACAGTTACCACAACAATCATGGAATCCGAAGTATGGAAATATGCAAGTTAATGTGTTTGGCAGCTCAATGTCACATGCACAATATTCTGGAAAAGAATCCGGGATGGTGTCCTCGCATTGTGATTCGGATGCCCAAAACCATACTCTCTCGGGTGTCAATATCGATTCATCTGGCCTTCTACTCCCCACCACTGTCCCAGGTTACAACACTACTTCATCAGCTGACACTAGTGCATCAACAATGCCATTAGGGGAGTCAGGATTCCAGGGTTCTCTATATGCCTGCATTCAAGATTCATCGTCATTTTTGCAAAATGCAGAGCAAAACGACCCACAAAACCAGAACCCGACATTTGTGAAGGTTTACAAATCGGGATCGGTTGGGCGTTCACTCGACATCTCTCGGTTCAACAGCTATCGTGAGCTGCGAGAGGAGTTGGGTCAGATGTTTGGAATTGAGGGAAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTCGACCGGGAGAATGATGTGCTTCTCCTTGGCGACGATCCGTGGGAATCATTCGTGAATAACGTTTGGTATATCAAAATACTTTCACCGGAAGATATTCAGAAGATGGGAGAACAAGCGGTAGAAACGCTTGCACTAGGTTCAGGACAAAGGCTTAACGGCACTGGTGAATCTCACCACATTGTTTCTGGACAACCACCATCAATTGGCTCACTTGAATACTGA 2550 0.4573 MKLSTSGLGQQGQHEGGGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGHIPNYPSLPPQLVCQLHNVTMHADVETDEVYAQMTLQPLTPEEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDGVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLLDGRDDANGLMWMRGGPADQGLNSLNFQGTSSLLPWMQQRLDPTLLGSDQNQQYQAMLAAGLQNMGSGGYLMRPQMMNFQQQPINYLQSGNSNSPLQLQQPQIIPQTVNMMQQPQAQVLTENLSQLLQKPNNNQEVQAQQQQHSYQDTLLIQNDQLHQRQQSNLPSPSYSKPDFLESNIKFSASVPSGQNMLGSLCTEGTGNLLNLSTLSRSGQSLMTEQLPQQSWNPKYGNMQVNVFGSSMSHAQYSGKESGMVSSHCDSDAQNHTLSGVNIDSSGLLLPTTVPGYNTTSSADTSASTMPLGESGFQGSLYACIQDSSSFLQNAEQNDPQNQNPTFVKVYKSGSVGRSLDISRFNSYRELREELGQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVETLALGSGQRLNGTGESHHIVSGQPPSIGSLEY 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00700 849 MobiDBLite consensus disorder prediction 1 20 - -
Tsu03g00700 849 Gene3D - 719 812 - -
Tsu03g00700 849 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Tsu03g00700 849 SUPERFAMILY DNA-binding pseudobarrel domain 115 260 IPR015300 -
Tsu03g00700 849 Pfam Auxin response factor 257 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu03g00700 849 SMART B3_2 131 233 IPR003340 GO:0003677
Tsu03g00700 849 PANTHER AUXIN RESPONSE FACTOR 1 834 - -
Tsu03g00700 849 Pfam AUX/IAA family 712 807 IPR033389 -
Tsu03g00700 849 ProSiteProfiles PB1 domain profile. 723 807 IPR000270 GO:0005515
Tsu03g00700 849 MobiDBLite consensus disorder prediction 830 849 - -
Tsu03g00700 849 CDD B3_DNA 130 231 IPR003340 GO:0003677
Tsu03g00700 849 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Tsu03g00700 849 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 834 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu03g00700 849 Gene3D - 295 367 - -
Tsu03g00700 849 Gene3D - 129 232 IPR015300 -
Tsu03g00700 849 SUPERFAMILY CAD & PB1 domains 721 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00700 Tsu-Chr3 6228742 6237398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00700 101 815 B3 DNA Binding Superfamily AT5G37020 66.895 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu03g00700 AUX_IAA 1.4e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00700 - - gmx:100784373 1431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00700 03 6228742 6237398 Tsu05g03056 05 41102520 41111425 PCT