LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g00698	ATGCGACGACAACAACTTAACCTCCTAATAACTACCTTAATCACCTTGTTTTATTCATGGAGCTTAACACAAGCTGATCCTCAAACACGTTTAATCAACAAAGGTTGTAGCACATACAACGCAACAAACTTATCAAATTTCTACCAAAATCTAAACACAACTTTGTTAGACTTGAAATCACAAGTAGGAAATGAAAACAAGCATTTTGCTACGGCACAATCAGCTAAAGGAGCAAATCCTGTTTATGCTTTGTTTCAGTGTAGGAATTATCTCTCTAATTCTGATTGTTCCGCTTGTTTCGCCGTTGCCGCTGCACAAATCCGGAATTGCTCAGCTGGTTCCAACGGTGCTCGTGTTATTTATGATGGTTGCTTCCTTAGGTATGAAAGCAATGGATTCTTCGACCAAACAACTTTACCTGGCAATAGTGTTCTTTGTGGAACCAAAACAGCAAATGGAGCCACTACTTTTAATGCAGCTGCACAACAAATACTATTGGATCTACAAACAGCAACACCAAAAATTCATGGTTTCTTTGCAGCTACAAAGACACAAGTTGCTGGAAATGCAATCTATGCAATTGCACAATGTGCTGAAACAGTTACTGAAAGTGGTTGTTTAGATTGCTTAACAGTTGGATTCACCAACATACAAGGTTGTTTTCCTAATACAGATGGTGAAGCTTTTGATGCTGGTTGTTTTATGAGATACTCAGAGAAATCTTTCTTTGCTGATAACCAGACTATTGATATTACACCCTTCTTGAAACAAGGAAGTTCAAGTAAGAAGGGAGCAATTATTGGTGGTGTTGTTGGAGGTGTAGTCCTTGTTCTGATCCTCCTTGCACTATTTGTTTGGTTTAGGCTCAAGAAGAAACCCAAGAGACACCCTAGAGGTGACATATTGGGAGCAACGGAGTTGAGAGGTCCGGTTACTTACCGATACAATGATTTGAAGTCTGCAACAAAAAATTTTagtgatgaaaataaattaGGAGAAGGAGGTTTTGGAGATGTATACAAGGGCACTCTAAAAAATGGTAACGTAGTAGCTGTCAAGAAATTGATTTTAGGCCATTCCGGCAAGATGGATGAACAATTTGAAAGTGAAGTGAAGCTTATAAGTAATGTTCATCACAGGAATTTAGTTCGACTTCTCGGATGTTGTAGTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAACAATAGCCTCGACAGATTCTTATTTGGTGAAAAGAAGGGTTCCCTCAACTGGATTCAAAGGTATGATATAATTTTAGGCACGGCAAGAGGTTTGGCCTATCTGCACGAAGATTTCCATGTTTGCATCATACATAGGGATATAAAGACCGGCAACATTCTCTTAGACGATGATCTTCAGCCTAAAATTGCTGATTTTGGGTTGGCAAGGCTTCTACCAGAAGATCAATCTCATCTTAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAATTATCAGAAAAGGCTGATACCTACAGCTATGGTATTGTAGTCTTGGAAATCATAAGCGGTCAGAAGAGTACCGAACTAAAGGCTGATGACGATGGTGAATACCTTCTTCAAAAGACATGGAAACTGCATGAGAGAGGCGTGCACTTGGAGCTTGTGGACAAGATCTTAGACCCTAATGACTATGATGGAGAAGAAGTGAAGAAAGTGATAGAGATTGCTTTAATGTGTACTCAAGCATCAGCTGGAATGAGACCAACAATGTCTGAAGTAGTAGCACTACTCCAAACCAAGAGCTTAGTGGAGCACCTGCAACCAACTATGCCTGTGTTTGTAGAAACGAATCTTAGGTCTCGGGAAGGCCACTCTACCTCAACTGGGGGCTCTTCTACATCTAATGCCACTGCATCCTTTTCTGTTCTATCAGCTCGATGA	1938	0.4004	MRRQQLNLLITTLITLFYSWSLTQADPQTRLINKGCSTYNATNLSNFYQNLNTTLLDLKSQVGNENKHFATAQSAKGANPVYALFQCRNYLSNSDCSACFAVAAAQIRNCSAGSNGARVIYDGCFLRYESNGFFDQTTLPGNSVLCGTKTANGATTFNAAAQQILLDLQTATPKIHGFFAATKTQVAGNAIYAIAQCAETVTESGCLDCLTVGFTNIQGCFPNTDGEAFDAGCFMRYSEKSFFADNQTIDITPFLKQGSSSKKGAIIGGVVGGVVLVLILLALFVWFRLKKKPKRHPRGDILGATELRGPVTYRYNDLKSATKNFSDENKLGEGGFGDVYKGTLKNGNVVAVKKLILGHSGKMDEQFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANNSLDRFLFGEKKGSLNWIQRYDIILGTARGLAYLHEDFHVCIIHRDIKTGNILLDDDLQPKIADFGLARLLPEDQSHLSTRFAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGQKSTELKADDDGEYLLQKTWKLHERGVHLELVDKILDPNDYDGEEVKKVIEIALMCTQASAGMRPTMSEVVALLQTKSLVEHLQPTMPVFVETNLRSREGHSTSTGGSSTSNATASFSVLSAR	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g00698	645	ProSiteProfiles	Gnk2-homologous domain profile.	29	133	IPR002902	-
	Tsu03g00698	645	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	24	639	-	-
	Tsu03g00698	645	Gene3D	-	28	133	IPR038408	-
	Tsu03g00698	645	Gene3D	-	142	242	IPR038408	-
	Tsu03g00698	645	ProSiteProfiles	Gnk2-homologous domain profile.	139	242	IPR002902	-
	Tsu03g00698	645	ProSiteProfiles	Protein kinase domain profile.	325	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00698	645	SUPERFAMILY	Protein kinase-like (PK-like)	309	614	IPR011009	-
	Tsu03g00698	645	ProSitePatterns	Protein kinases ATP-binding region signature.	331	354	IPR017441	GO:0005524
	Tsu03g00698	645	Gene3D	Transferase(Phosphotransferase) domain 1	402	608	-	-
	Tsu03g00698	645	MobiDBLite	consensus disorder prediction	620	645	-	-
	Tsu03g00698	645	Pfam	Salt stress response/antifungal	36	130	IPR002902	-
	Tsu03g00698	645	Pfam	Salt stress response/antifungal	150	239	IPR002902	-
	Tsu03g00698	645	Gene3D	Phosphorylase Kinase; domain 1	297	401	-	-
	Tsu03g00698	645	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	24	639	-	-
	Tsu03g00698	645	Pfam	Protein kinase domain	326	593	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00698	645	SMART	serkin_6	325	601	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00698	645	CDD	STKc_IRAK	331	597	-	-
	Tsu03g00698	645	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	446	458	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g00698	Tsu-Chr3	6189614	6216565	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g00698	1	645	Receptor kinase-like Gene Family	AT1G70520	36.132	1.96e-128	391

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Tsu03g00698		Pkinase	7.1e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g00698	-		-	gmx:100813585	985.711