Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00680 ATGGCGAATCaaGATCAAGATGGATTAACTTGTTTCAGTGTTAGCCCTTCAAACTCAATAGGAAATGGAGTTTCTTTGAATTCTGGATCACATTCTGTTACACATATTCAACTCAGCGATCATTTATCTTGCGCGAATGACTACGCTCTTAAGATAAGGAAACCATATACTATAACAAAACAGCGAGAAAAATGGACCGATGAAGACCATAGGAAGTTCCTAGAAGCCTTAAAGCTGTATGGCCGGGCCTGGCGACGCATTGAAGAACATGTTGGCACAAAGACTGCGGTACAAATTCGAAGTCATGCTCAGAAGTTTTTCTCTAAGGTTCTTCGCGACAAAAGTGAGTATACTACAAAAACTAAGGGCTCAATTGATATTCCTCCTCCACGACCAAAAAGAAAGCCTGTGCATCCTTATCCTCGGAAGCTAGTTGAGACGACCGATAGTAAAGGAATTTTAATCCCGAAAAAGGCAATGAATTCTATTTCTTTGAAGACATCAGATTTTGATCAAGAAAGCCGATCTCCCAAATCTGTAATATCAACACCTGGTTCCGAAAGCCTTGGTTCGTCCAATTCAGATACACCAAATGCAAGTTTATCTCCAATATCATCGATTAGCTGTGTTTGCGCAAGTGTTTTTACATCTGCTAAATTCAAAACATCATCAAAGGAAGAAGCTAAGCTAGATGCTGATTCGGCTTCCGATGAAAAACCTGTTATGAAACTTGAGATTCTCTCCAATGAAATAGTTTCTACTAAAGAAAGCATCGCAGAAGAACCGTCTCGTCAAACTCTTAAACTTTTTGGGATGACTTTATTTGTAACCGATACTCACAGAACATCTTCTCCAACAATTGAGGCATGCAAACCAATACCTATTAACATAAATTTTAGCAAGGTGGAAGGAAAATTTGAACTTGTAGGAAATAGTTCACTATGTGAAAAATCAGCCATATCAAAGCTAAGAGTAACAGTGAGACATGAAACTTGTGGTAAAGGGTTTGTGCCATATAAAAGGTGCATGTCAAAGAAATAA 1041 0.3842 MANQDQDGLTCFSVSPSNSIGNGVSLNSGSHSVTHIQLSDHLSCANDYALKIRKPYTITKQREKWTDEDHRKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDKSEYTTKTKGSIDIPPPRPKRKPVHPYPRKLVETTDSKGILIPKKAMNSISLKTSDFDQESRSPKSVISTPGSESLGSSNSDTPNASLSPISSISCVCASVFTSAKFKTSSKEEAKLDADSASDEKPVMKLEILSNEIVSTKESIAEEPSRQTLKLFGMTLFVTDTHRTSSPTIEACKPIPININFSKVEGKFELVGNSSLCEKSAISKLRVTVRHETCGKGFVPYKRCMSKK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00680 346 MobiDBLite consensus disorder prediction 127 145 - -
Tsu03g00680 346 MobiDBLite consensus disorder prediction 118 148 - -
Tsu03g00680 346 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 60 109 IPR006447 GO:0003677
Tsu03g00680 346 CDD SANT 64 107 IPR001005 -
Tsu03g00680 346 ProSiteProfiles SANT domain profile. 60 111 IPR017884 -
Tsu03g00680 346 PANTHER PROTEIN REVEILLE 7-RELATED 23 292 - -
Tsu03g00680 346 MobiDBLite consensus disorder prediction 167 198 - -
Tsu03g00680 346 SMART sant 61 109 IPR001005 -
Tsu03g00680 346 Pfam Myb-like DNA-binding domain 62 105 IPR001005 -
Tsu03g00680 346 SUPERFAMILY Homeodomain-like 56 109 IPR009057 -
Tsu03g00680 346 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Tsu03g00680 346 PANTHER SWI/SNF COMPLEX-RELATED 23 292 - -
Tsu03g00680 346 Gene3D - 64 110 - -
Tsu03g00680 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00680 Tsu-Chr3 6021714 6024267 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu03g00680 Myb_DNA-binding 6.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00680 - - gmx:780539 427.557