Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00679 ATGTCACAGCTTGTGTTAATCTCAATCTCAATTTACATTATTACCCTCCAACTAACTTCATCCTCATCTACTTCTCGTTACTCTTCTCCATCACCACCAGCCACACCATTCTCCGAATCTTCACCCGAACCTCCCTCCTCCACCGTCTCCGATTGGCTCTCCGCTCACGCTACATACTACTCTTCCACCGATGACACCAGAGACGCAGTAGACGGAGCGTGCGGCTACAGAGATACTCACAGAGACGGTTACGGTATCACGGCATCAGCAGCTTTGAGTGAAACTCTGTTCGTCCGTGGTCAGATCTGTGGTGCGTGCTTTGAGCTTCGATGCCTTGAGGAGGATGTACCTTTTGATCGGCGGTGGTGTGTTTCCGGTAAGTCGATTGTTGTGACTGCTACTAATTTTTGTGCTCCGAATTATGGTTTTGATGCGGAGAGTGAAGGTGGACATTGTAATCCTCCTAAACAGCATTTTGTTCTTCCGGTTGAAGCTTTTGAGAAGATTGCTATTTGGAAAGGGGGTAACATGCCGGTGAAGTATCGCAGGATAAAGTGCATAAGGGAAGGTGGAATCCGATTTACAATTACTGGTTCTGGCATCTTCAATTCAGTTCTGATCAGCAATGTGGCTGGTATAGGAGACATTGTTAGTGTCAAAGTTAAAGGTTCAAGAACTGGTTGGATTTCTATGGGTCGGAATTGGGGTCAAAACTGGCATGTAAATGCTTTACTACAAAACCAACCTCTTTCATTTGAGGTTACTAGTAGTGATGGAGTAACCATTACATCTTACAATGTAGCTCCCAAGAATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAGTCTTAG 858 0.451 MSQLVLISISIYIITLQLTSSSSTSRYSSPSPPATPFSESSPEPPSSTVSDWLSAHATYYSSTDDTRDAVDGACGYRDTHRDGYGITASAALSETLFVRGQICGACFELRCLEEDVPFDRRWCVSGKSIVVTATNFCAPNYGFDAESEGGHCNPPKQHFVLPVEAFEKIAIWKGGNMPVKYRRIKCIREGGIRFTITGSGIFNSVLISNVAGIGDIVSVKVKGSRTGWISMGRNWGQNWHVNALLQNQPLSFEVTSSDGVTITSYNVAPKNWTFGQTFEGKQFES 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00679 285 Gene3D - 36 186 IPR036908 -
Tsu03g00679 285 SUPERFAMILY Barwin-like endoglucanases 49 209 IPR036908 -
Tsu03g00679 285 Pfam Lytic transglycolase 90 181 IPR009009 -
Tsu03g00679 285 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 280 IPR007117 -
Tsu03g00679 285 PANTHER EXPANSIN-A13 32 284 - -
Tsu03g00679 285 Gene3D - 192 283 IPR036749 -
Tsu03g00679 285 PRINTS Expansin signature 237 258 IPR002963 GO:0009664
Tsu03g00679 285 PRINTS Expansin signature 266 282 IPR002963 GO:0009664
Tsu03g00679 285 PRINTS Expansin signature 149 166 IPR002963 GO:0009664
Tsu03g00679 285 PRINTS Expansin signature 190 202 IPR002963 GO:0009664
Tsu03g00679 285 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Tsu03g00679 285 PRINTS Expansin signature 83 97 IPR002963 GO:0009664
Tsu03g00679 285 PRINTS Expansin signature 166 179 IPR002963 GO:0009664
Tsu03g00679 285 SUPERFAMILY PHL pollen allergen 188 280 IPR036749 -
Tsu03g00679 285 SMART dpbb_1 89 181 IPR007112 -
Tsu03g00679 285 MobiDBLite consensus disorder prediction 22 48 - -
Tsu03g00679 285 Pfam Expansin C-terminal domain 192 269 IPR007117 -
Tsu03g00679 285 PRINTS Expansin/Lol pI family signature 266 280 IPR007118 GO:0005576
Tsu03g00679 285 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Tsu03g00679 285 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Tsu03g00679 285 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576
Tsu03g00679 285 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Tsu03g00679 285 PRINTS Expansin/Lol pI family signature 174 190 IPR007118 GO:0005576
Tsu03g00679 285 PANTHER EXPANSIN-A15 32 284 IPR002963 GO:0009664
Tsu03g00679 285 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 71 191 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00679 Tsu-Chr3 6018719 6020961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00679 51 285 Expansin Gene Family AT3G03220 70.213 7.02e-122 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00679 - - mtr:MTR_3g064510 473.011