Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00678 ATGACAATGGAAGAACATGAACAAGTTTCCTTGCCAGGAACAGTGCCATTTGATAGAGCTCTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTCAAGTGTGGTAGTCGAGGAAAGCCGAAGCTCTGCCCTTTTAGACTTTCTCCGGATGAGAGAAATTTGATCTGGTGCTCAGGACAGCAGGAAAAACATTTGCGGTTAAGCGGAGTTACAAAAATTGTTCAAGGACAAGGAAATATAAAATCTCAGAGACAAAACGAAACCGAAAAGGAATGCCATTCATTTTCACTGATCTATGCTAATGGTGAACACACTCTTGATCtgATATGCAAGGATAAAGCACAAGCTGCTACTTGGTTTGTTGGCTTGAAAGCTGTGATTTCAAGGTGTCAGCAACCGAAAGCCTTTAGTAGTTTACGGAGCTGCAAAGGAGTGCAGAGCTGTGTCAGTAGTCCCTCTGGAATTTTACGCCGAAAGAAGAATCTTGGTCTTCTAGATGATACCTCTCAATTTACTCAGGTACATAGCGTATGTGCAAGTCCAACTCTGTCACTTTCAGAAAGGTGTTTTTCTGATGGCATGTCGTATACATCTGATAACTTTTATTCATCGGCATCATCCCTCTCCAGCACTCATGGCAGAACAGATAATTCAGTCCCAAGTTCTCCATATATTAAACCAGATATTCATAGCAATACTAAAACATCTCGTTTCGAAAAGGAGTACAAGAAGGATTTGTGGTCATATAGATCTATATTGTCTCCTACTACCTCCTCACATGTAGGAAATAGCAATAACAATGTATTGAAGGATGTAATGATATGGGGTGGTGGAATTGGCTGCCTTGTAGGGGTTGTGAATGAAAGGTTTGTCCAAAATAGTATTTATTCTTTAGTGCCAAAGTTACTCGAATCGACCGCAATGTTAGATGTACAAAATATAGCTTTAGGAGGAAACCATGCTGCAATAGCTACAAAACAAGGCGAAGTTTATTGTTGGGGTCAAGGGAAAAGAGGAAGGTTAGggcaaaaaattgatatggaCATTAGCTCCCCCAAAATAGTTGATTCTCTTAGTGATATTCGTGTAAAAAAGGTTGCCTGTGGTGAGTATCACACATGTGCTTTGACTGATTCGGGTGAAGTATATGCGTGGGGGAATGACATTTGTTGTTCGGATTCGGTTGATGAAGGGAGAATTAGGAGTCAGTGGTTAACACATAAACTTTCTTTACCTGTAGAGGGTATTAGTATTTCAAGTGTTTCTTGTGGAGAATGGCATACCGCGATTGTTTCCAGCTGCGGTCGGTTATTTACATACGGAGATGGTACATTTGGGGTGCTCGGACATGGGAATTATCATAGCTTTTCTAGTCCAAAAGAAGTCGAGTCTCTTAAGGGTTTATGTGTGAGGTCTGTAGCTTGTGGAACATGGCATACAGCCGCAATTATCGAAGTCATCGCTGACCGTTTTAAGTACAATACTTCTACTGGTAAGCTGTTTACATGGGGTGATGGAGATGAAGCGAGGCTTGGTCATTCCGATAATGGAAACAAGCTTGTACCAACATGTGTTTCACAGCTTGTCGACTACGATTTTGTCCAAGTATCTTGTGGAAGAATGTTGACTCTAGCACTTACTAATATGGGGAAAGTTTTCGCTATTGGAAGTGCAAAATATGGACAATTGGGAAATCCACATGTTAAGGATAGAGCAGTTCTGGTTGAAGGTATGCTTAAACAAGAGTATGTGAAAATGATATCTTGTGGTTCATATCATGCTGCTGTTTTGACATCTTCAGGAAGTGTCTACACATGGGGCAAAGGCGAAAATGGACAACTTGGGCTAGGCGATACCGAAAACCGATACACACCTTGTTTTGTTGAGGCACTAAGAGATAGGCAGGTAGATACAATAACTTGTGGTCCAAGTTTCACAGTTGCAGTCTGTTTGCATAAACCTATTTCAATTAGTGACCAATCAAGTTGTAGTGGTTGTAGGTTAGCATTTGGTTTCACAAGGAAGAAACATAACTGTTATAACTGTGGTCTTTTGTTTTGTCGTGCTTGTAGTAGTAAAAAGGTTACCGATGCGTCTCTAGCCCCAGTTAAGAGCAAGGCCTTTCGTGTTTGTGATTCGTGCTTTGATAGAAAGCAAGGAAGTAGTAGTACACCTTCAGTTATGGACTCATTAAAGTCTAGAAATTGTAACAATCTGCAGATACAAAAGCATCATCAGAATAAAATTGGTGATTTCACCGAAGATAGAGGCGAAACAAATGTGACAAATGGTCCTTTATTGTCTGTTAGTCAATCGTGTTACCGGAAAAGCATGCCTAGTGGAAGAAAGATTTGGAAAAACCAACAAGAGAGCCAACACGATTTAGAAGATAATTCTTCTAAGTTAGGTAGTGTGCCGCAATGTGGACAAGTTCCATGTTCAGCACAATTTGGAATCAATTGTACAGAAAATTCAGTTGTACATGAGACAGATACGTCAAAGTCTGATAAGTTGCTCTTAGAAGAAGTTCAAAGGCTGAGAGCTGAGGCTAAGAGACTTGAAAAGCAATGTGAGCTCAAAGACAATGAAATACTAGAGTGTCGACAAAAAGTTGAGGAGAGTTGGTCTGTGGCCAAAGAGGAAGCTGCTAAGTGCAAAGCAGCAAAAGATGTCATAAAAGCCTTGGCATTAAGGCTTCATACATTATCAGGAAAAGATAATCATGGACTAGAACAAAAGGCTGGACTACAAGAATTTCATCCAAATTTGGCACCAATACAAACAGATATGAATAGTCCAAGAAATGCCAACATGGATAGTTTATCAAATTCCCCTATAATATTCTCTAGTGCATTAAAGTCCAAATTTGGGAGAAGTATCCTTCTCAAAAATGATAAGTTGATGGAGAAGAATAATCTCACTAAAGCAGAATCTCAACAAAACAATGCAGATGGCTTGAAAATGGTTGAATGGGTAGAACAGTATGAGAATGGTGTTTACATAACATTGACAAGCTCGCCGAGTGGAGAAAGAGGAGTTAAGCGTGTGAGATTTAGCCGGAAGCGATTTTCGCAGAAAGAAGCTGAAAAGTGGTGGGAAGAGAATCAAACAAAAGTGTATAATAAGTATGAAATTGAAGGAATTTAA 3156 0.3951 MTMEEHEQVSLPGTVPFDRALEQAIVSIKKGAYLLKCGSRGKPKLCPFRLSPDERNLIWCSGQQEKHLRLSGVTKIVQGQGNIKSQRQNETEKECHSFSLIYANGEHTLDLICKDKAQAATWFVGLKAVISRCQQPKAFSSLRSCKGVQSCVSSPSGILRRKKNLGLLDDTSQFTQVHSVCASPTLSLSERCFSDGMSYTSDNFYSSASSLSSTHGRTDNSVPSSPYIKPDIHSNTKTSRFEKEYKKDLWSYRSILSPTTSSHVGNSNNNVLKDVMIWGGGIGCLVGVVNERFVQNSIYSLVPKLLESTAMLDVQNIALGGNHAAIATKQGEVYCWGQGKRGRLGQKIDMDISSPKIVDSLSDIRVKKVACGEYHTCALTDSGEVYAWGNDICCSDSVDEGRIRSQWLTHKLSLPVEGISISSVSCGEWHTAIVSSCGRLFTYGDGTFGVLGHGNYHSFSSPKEVESLKGLCVRSVACGTWHTAAIIEVIADRFKYNTSTGKLFTWGDGDEARLGHSDNGNKLVPTCVSQLVDYDFVQVSCGRMLTLALTNMGKVFAIGSAKYGQLGNPHVKDRAVLVEGMLKQEYVKMISCGSYHAAVLTSSGSVYTWGKGENGQLGLGDTENRYTPCFVEALRDRQVDTITCGPSFTVAVCLHKPISISDQSSCSGCRLAFGFTRKKHNCYNCGLLFCRACSSKKVTDASLAPVKSKAFRVCDSCFDRKQGSSSTPSVMDSLKSRNCNNLQIQKHHQNKIGDFTEDRGETNVTNGPLLSVSQSCYRKSMPSGRKIWKNQQESQHDLEDNSSKLGSVPQCGQVPCSAQFGINCTENSVVHETDTSKSDKLLLEEVQRLRAEAKRLEKQCELKDNEILECRQKVEESWSVAKEEAAKCKAAKDVIKALALRLHTLSGKDNHGLEQKAGLQEFHPNLAPIQTDMNSPRNANMDSLSNSPIIFSSALKSKFGRSILLKNDKLMEKNNLTKAESQQNNADGLKMVEWVEQYENGVYITLTSSPSGERGVKRVRFSRKRFSQKEAEKWWEENQTKVYNKYEIEGI 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00678 1051 SUPERFAMILY FYVE/PHD zinc finger 661 725 IPR011011 -
Tsu03g00678 1051 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 501 552 IPR000408 -
Tsu03g00678 1051 Pfam Transcription factor regulating root and shoot growth via Pin3 993 1046 IPR013591 -
Tsu03g00678 1051 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 661 730 IPR013083 -
Tsu03g00678 1051 CDD PH_PLC_plant-like 19 131 - -
Tsu03g00678 1051 PRINTS Chromosome condensation regulator RCC1 signature 599 620 IPR000408 -
Tsu03g00678 1051 PRINTS Chromosome condensation regulator RCC1 signature 424 440 IPR000408 -
Tsu03g00678 1051 PRINTS Chromosome condensation regulator RCC1 signature 542 560 IPR000408 -
Tsu03g00678 1051 PRINTS Chromosome condensation regulator RCC1 signature 333 349 IPR000408 -
Tsu03g00678 1051 PRINTS Chromosome condensation regulator RCC1 signature 314 327 IPR000408 -
Tsu03g00678 1051 PRINTS Chromosome condensation regulator RCC1 signature 383 399 IPR000408 -
Tsu03g00678 1051 PRINTS Chromosome condensation regulator RCC1 signature 440 454 IPR000408 -
Tsu03g00678 1051 CDD FYVE_like_SF 665 718 - -
Tsu03g00678 1051 Gene3D - 402 660 IPR009091 -
Tsu03g00678 1051 Pfam FYVE zinc finger 662 720 IPR000306 GO:0046872
Tsu03g00678 1051 PANTHER F12P19.9 PROTEIN 22 1047 - -
Tsu03g00678 1051 ProSiteProfiles BRX domain profile. 992 1047 IPR013591 -
Tsu03g00678 1051 Pfam Regulator of chromosome condensation (RCC1) repeat 603 652 IPR000408 -
Tsu03g00678 1051 Pfam Regulator of chromosome condensation (RCC1) repeat 331 379 IPR000408 -
Tsu03g00678 1051 Pfam Regulator of chromosome condensation (RCC1) repeat 553 600 IPR000408 -
Tsu03g00678 1051 Pfam Regulator of chromosome condensation (RCC1) repeat 501 549 IPR000408 -
Tsu03g00678 1051 Pfam Regulator of chromosome condensation (RCC1) repeat 438 486 IPR000408 -
Tsu03g00678 1051 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 331 382 IPR000408 -
Tsu03g00678 1051 Gene3D - 20 137 IPR011993 -
Tsu03g00678 1051 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 438 489 IPR000408 -
Tsu03g00678 1051 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 660 722 IPR017455 -
Tsu03g00678 1051 SUPERFAMILY PH domain-like 21 130 - -
Tsu03g00678 1051 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 604 655 IPR000408 -
Tsu03g00678 1051 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 590 600 IPR000408 -
Tsu03g00678 1051 SUPERFAMILY RCC1/BLIP-II 274 656 IPR009091 -
Tsu03g00678 1051 SMART fyve_4 654 723 IPR000306 GO:0046872
Tsu03g00678 1051 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 476 486 IPR000408 -
Tsu03g00678 1051 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 553 603 IPR000408 -
Tsu03g00678 1051 Coils Coil 839 873 - -
Tsu03g00678 1051 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 22 1047 - -
Tsu03g00678 1051 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Tsu03g00678 1051 Gene3D - 233 401 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00678 Tsu-Chr3 5991342 5997972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00678 987 1049 Major Intrinsic Protein MIP AT1G31880 44.444 3.02e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00678 - - gmx:100794953 1632.08