Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00673 ATGGTTCTCTCAAAAACATCCTCTGAATCCGATGTCTCTGTCCATTCAACCTTTGCTTCTCGCTATGTTAGAACTTCACTTCCTAGATTTAAGATGCCGGATGAGTCGATACCGAAGGAGGCAGCATACCAAATAATAAACGATGAATTGATGTTGGATGGAAATCCTAGATTGAATCTAGCATCTTTTGTGACAACATGGATGGAGCCTGAATGTGATAAGCTTATTATGGCTTCCATCAACAAGAACTATGTTGACATGGATGAATACCCTGTCACCACTGAACTtcagAATCGGTGTGTTAACATGATAGCTCATCTTTTCAATGCACCACTTGAAGAAAATGAGGCTGCAGTTGGTGTTGGCACTGTTGGCTCATCAGAAGCTATAATGTTAGCTGGATTggcattcaaaagaaaatggcagaacaaaagaaaacaagagGGGAAACCTTTTGATAAGCCCAACATTGTCACTGGAGCCAATGTCCAGGTTTGTTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAATTGAAAGAGGTGAAACTAAGTGAAGGATACTATGTAATGGACCCTAAAAAAGCTGTAGAATTGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACATTAAATGGAGAATTTGAAGATGTTAAAACCTTAAATGATCTCCTAGTTGAAAAGAATAAGGAAACCGGATGGGACACTCCTATTCATGTCGATGCAGCTAGTGGTGGCTTCATTGCCCCGTTTATTTATCCGGAGCTCGAGTGGGATTTTCGCTTACCGCTAGTGAAGAGCATCAACGTTAGTGGTCACAAATATGGTCTTGTCTATGCCGGAATTGGTTGGGCTGTTTGGAGAAGCAAGGAAGACTTGCCGGAGGAACTCATCTTTCACATCAACTATCTAGGAGCTGATCAACCTACCTTTACCCTCAATTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTATGAGGGGTATAAAAATGTGATGGAAAATTGTAGAGATAATATGATAGTATTGAAAGAGGGGCTCGAGAAAATGGGACGATTCAACATTGTGTCGAAAGACGATGGTGTTCCTCTAGTAGCTTTCACATTGAAGGACCACACAAACTTTGATGAATTCCAAATCTCTGACTTGTTGAGGCGCTTCGGATGGATTGTTCCGGCATATAGCATGCCCCCGGATGCACAACACATAACTGTTCTACGTGTTGTCATAAGGGAAGATTTCTCGAGAACTTTAGCGGAGCGCCTTGTGGCTGATGTCGAGAAAGTGTTGCACGAGCTTGATACACTTGCGGCGAGGATAAGGATGATAAGTAGCACTAGTAGTGTTACAGTTAGTGAAGAAGTTGTGAAAAATAATGGTCAAGTTGTGGCTACTAAAAAGAGTGCTTTGGAGACTCAGAGAGAAATCACTGCTGTTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGCTGAATGATAAGATGAATGGTGTTTGCTAG 1530 0.4085 MVLSKTSSESDVSVHSTFASRYVRTSLPRFKMPDESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEENEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKQEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPKKAVELVDENTICVAAILGSTLNGEFEDVKTLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWAVWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCRDNMIVLKEGLEKMGRFNIVSKDDGVPLVAFTLKDHTNFDEFQISDLLRRFGWIVPAYSMPPDAQHITVLRVVIREDFSRTLAERLVADVEKVLHELDTLAARIRMISSTSSVTVSEEVVKNNGQVVATKKSALETQREITAVWKKFVLERKKLNDKMNGVC 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00673 509 Gene3D - 361 447 - -
Tsu03g00673 509 CDD DOPA_deC_like 59 439 - -
Tsu03g00673 509 PANTHER GLUTAMATE DECARBOXYLASE 1 509 - -
Tsu03g00673 509 Gene3D - 66 360 IPR015421 GO:0003824
Tsu03g00673 509 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Tsu03g00673 509 PANTHER GLUTAMATE DECARBOXYLASE 1 509 IPR010107 GO:0004351|GO:0006536|GO:0030170
Tsu03g00673 509 Gene3D - 1 65 - -
Tsu03g00673 509 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Tsu03g00673 509 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00673 Tsu-Chr3 5948768 5955874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00673 1 509 Calmodulin-binding Proteins AT5G17330 83.170 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00673 K01580 - gmx:100796533 934.095