Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00659 ATGAGACCATTTTTTGATCTTGAAGTAGAGGCCACAGAGGAATATGAATCTGAAGTCAGTAGCCATGGTATTGCTTCCAATACCTCCCCCAACTCTTCCATCATCACAAATCCAACGGAGTTTCATCCCCATTCAGAATCTATCTCATTAGACTTATCACTTAATTTCAACATCAACAATGACTTAGTTGCTAGAGATTCAACAGGAATCTCATTCTCAAGCACCAGTGAGAGCAGCTATGAACCTATAATTCCAAGAGTTTTCTCTTGCAATTATTGTTGGCGCAAATTTTATAGCTCTCAGGCACTAGGTGGACACCAAAATGCACACAAGAGAGAAAGAACATTAGCGAAACGAGCTATGCGAATGGGACTATTCACCGAGAGGTATGCAAGTTTAGCATCTATCCCTCTAAATGGTAATTCTTTCAGGTCCTTAGGTATAAAGACACACTCTTCACTACACCATGGTTTTTCGCCACCAACAATAAGGCCTGTTCCGGAGATAAAAAGTAATGCGGGATTCAAACAAGGATGTATTGGTCATCCGATTTTATTGGAGGATGATGAGACAGAACTGTTCTGGCAAGGTAGTTTCCATCAAGTTACTGAGGGCGGAAAGGTTGGATCAACACATTGGACATTGAACAATCAGACAAGTGACTTTAACACCACAGGAAGTAATACTCATGAGATTTCAAATATGTGTTTTACTGAGGTGAATGTGAAACCATTGGTTGATAATATAGAGATTTCAGCACCTGAATTAACATTGAAACTTTGA 783 0.3959 MRPFFDLEVEATEEYESEVSSHGIASNTSPNSSIITNPTEFHPHSESISLDLSLNFNINNDLVARDSTGISFSSTSESSYEPIIPRVFSCNYCWRKFYSSQALGGHQNAHKRERTLAKRAMRMGLFTERYASLASIPLNGNSFRSLGIKTHSSLHHGFSPPTIRPVPEIKSNAGFKQGCIGHPILLEDDETELFWQGSFHQVTEGGKVGSTHWTLNNQTSDFNTTGSNTHEISNMCFTEVNVKPLVDNIEISAPELTLKL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00659 260 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 260 - -
Tsu03g00659 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Tsu03g00659 260 PANTHER ZINC FINGER PROTEIN JAGGED 1 260 IPR045320 GO:0003700
Tsu03g00659 260 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Tsu03g00659 260 MobiDBLite consensus disorder prediction 19 40 - -
Tsu03g00659 260 MobiDBLite consensus disorder prediction 16 40 - -
Tsu03g00659 260 SUPERFAMILY beta-beta-alpha zinc fingers 86 115 IPR036236 -
Tsu03g00659 260 Gene3D Classic Zinc Finger 71 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00659 Tsu-Chr3 5802944 5806011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00659 1 260 C2H2 Transcription Factor Family AT1G66140 42.268 3.45e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu03g00659 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00659 - - mtr:MTR_3g065020 326.635