Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00657 ATGGTTTTGTCATGGACAAGAAGAAACATGTTCCGTCGTACCCACAAAGCAAAAGAACAACTTTCCGGCGGCGATTTAACGGTGGAGGAGATAACAATCCCAACCCATTTCCGGTGTCCGGTGAGTCTAGATTTGATGAAAGATCCAGTTACTTTATCAACAGGAATCACTTATGATAGAGTAAGTATTGAAAAATGGATTGAATCTGGTAACAAAACATGCCCAGTTACAAATCAGAAACTTTCAAGCTTTGAAATCACACCAAATCATACTATAAGAAAAATGATTCAGAATTGGTGTGTTGAAAATATTTCTTATGGAATTGAAAGAATTCCTACTCCTCGTATACCTGTTTCTAGTTACGAGGTTTCTGAGATTTGTACTAGGTTGTTGTCGGGTTGTAGAAATTTAGATGAGAAAAAGTGTGTTGAGTTTGTTGGAAAGATTAAGGTTTGGTGGAGAGAAAGTGAGAGAAATAAAAGGGTTATTGTTGGAAATGGTGTTTTTTCTGTTCTTGCAACGGTTTTTGATTCATTTTCATGTGTTTCATTTGAGAAACATGTTGTTATTTTGGAAGAGATTTTGGAGATTTTAACATGGATGGTTATGACACCTTTTGGTGATTCAAAATCAAGATTGTGTTTATCGTCGAATTCTTTAAGTTGTTTAGTTTGGTTTCTTGACGGTAAAGATTTAGGAGCAAGACAAAATGCTGTTTTGTTACTTAAGGAAACTATGAATGTTGAAGAATTATCAAAAGTTGAAGGTGTTGTTGAAGGTTTAATTAAGATTATTAAGGAACCAATTGGGTCAAGTGCTACAAAAGCATGTTTAATAACAATTTTTAAGTTGGTTTCATCAACTAAAAATAGAGTTGAAATTGGTGAAAAATTTGTTGAATTGGGTTTAGTTTCATTTTTACTTGAAACAATTGTTGATGGAGAAAAAGGGATATGTGAGAAAGCACTTGGTGTGTTGGATTGTTTATGTGATTTCAAGAAAGGAATTGAGGTTATTAAAATGAATGATTTAACTTTACCTCTTGTGATTAAGAAACTTTTAAGGGTTTCTCCTTTAGCTTCTAGTTTTGTTGTTGGTATTGTTAGGAAGATATTATGtgagaaaaaggaagaaagagTTTTGATTGAAGCAATTCAACTTGGTGCTTTTCAGAAATTGTTGGTTATGTTGCAAGTTGGATGTGAAGAGAAAACAAAGGAGAATACTACTGAGTTGTTGAAATTGTTGAATGGTTATAGAAGCAAAGCAGAATGTGTTGACTCTTCATTAGATTTTAAGTATCTTAAGAACTAA 1314 0.3242 MVLSWTRRNMFRRTHKAKEQLSGGDLTVEEITIPTHFRCPVSLDLMKDPVTLSTGITYDRVSIEKWIESGNKTCPVTNQKLSSFEITPNHTIRKMIQNWCVENISYGIERIPTPRIPVSSYEVSEICTRLLSGCRNLDEKKCVEFVGKIKVWWRESERNKRVIVGNGVFSVLATVFDSFSCVSFEKHVVILEEILEILTWMVMTPFGDSKSRLCLSSNSLSCLVWFLDGKDLGARQNAVLLLKETMNVEELSKVEGVVEGLIKIIKEPIGSSATKACLITIFKLVSSTKNRVEIGEKFVELGLVSFLLETIVDGEKGICEKALGVLDCLCDFKKGIEVIKMNDLTLPLVIKKLLRVSPLASSFVVGIVRKILCEKKEERVLIEAIQLGAFQKLLVMLQVGCEEKTKENTTELLKLLNGYRSKAECVDSSLDFKYLKN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00657 437 Gene3D - 121 420 IPR011989 -
Tsu03g00657 437 Pfam U-box domain 33 103 IPR003613 GO:0004842|GO:0016567
Tsu03g00657 437 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Tsu03g00657 437 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
Tsu03g00657 437 CDD RING-Ubox_PUB 37 79 IPR045210 -
Tsu03g00657 437 SUPERFAMILY RING/U-box 24 103 - -
Tsu03g00657 437 SUPERFAMILY ARM repeat 143 403 IPR016024 -
Tsu03g00657 437 PANTHER WDSAM1 PROTEIN 13 437 IPR045185 GO:0061630
Tsu03g00657 437 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 13 437 - -
Tsu03g00657 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 108 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00657 Tsu-Chr3 5779533 5781133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00657 30 436 U-box Gene Family AT5G37490 47.343 2.62e-113 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00657 - - gmx:548086 576.244