Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00656 ATGACTAGAAAAAAGGTGAAACTCGCATTCATAATCAATGATTCTGCGAGGAAGGCGACATtcaagaaaaggaagaaaggTCTAATGAAAAAGGTTAGTGAACTTAGCACTCTTTGTGGAATTGATGCTTGTGCTATAATTTACAGTCCATATGATCCTCAACCAGAGGTTTGGCCATCTCCATTAGGAGTCCAAAGGGTACTTTCGAAGTTTCGAAGAATGCCTGAATTGGAGCAAAGTAAAAAGATGGTGAATCAAGAGAGTTTCTTGAGGCAGAGGATTCAAAAGGCGAAAGATCaattaacaaaacaaagaaaggaTAATAGAGAGAAAGAAATGACCCAATTAATGTTTCAATATCTTAGTGCTGATAAAATTATGCCGAATATAAGTATGGTTGATTTGAATGATATGGCATGGTTGATTGATCAATATTTAAAAGATATCAATAGAAGGGTTGAATCATTGACCAAAAATGGTCAAGGTCAACCTCAAATGGTAGCACCAACAATGGTGACTAATGGTGTGGCTAAGATTGAAGATAATGGACAAGGAAGTAATGGACATGttGGGGAGACAGAAGAATCAAAGACAAGCATTGGGGTAGATTGCTATGCATATTGGTCAGGTAGAAATGCAATTTGGAAAGGCGGCGAAGATGGGAAAAATGAACGGTGTGGCGGTGGGAAAGGGGGAGGAGGTGGAGGTGGAAAGGGGTTCAACACCCTTATGTGGAAAAAAGTTAAGTCTCGGGGCACAGAATGGTGGAAAGGTGGAAAAGGTAGTGGCAATCGAAATGTGGGCGGAGGGGGATACGTCCAACCCATTCCTGGTGGGGGAAATGGTGTCGGTGGTGGAAATGTTAAAAACATTCCCAACGGTGTAAATGAGGGCGGAAGTGGAAAAGGGGACAACGGTTGA 921 0.4017 MTRKKVKLAFIINDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYDPQPEVWPSPLGVQRVLSKFRRMPELEQSKKMVNQESFLRQRIQKAKDQLTKQRKDNREKEMTQLMFQYLSADKIMPNISMVDLNDMAWLIDQYLKDINRRVESLTKNGQGQPQMVAPTMVTNGVAKIEDNGQGSNGHVGETEESKTSIGVDCYAYWSGRNAIWKGGEDGKNERCGGGKGGGGGGGKGFNTLMWKKVKSRGTEWWKGGKGSGNRNVGGGGYVQPIPGGGNGVGGGNVKNIPNGVNEGGSGKGDNG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00656 306 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Tsu03g00656 306 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Tsu03g00656 306 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 171 - -
Tsu03g00656 306 MobiDBLite consensus disorder prediction 254 306 - -
Tsu03g00656 306 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Tsu03g00656 306 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 171 - -
Tsu03g00656 306 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu03g00656 306 Coils Coil 87 114 - -
Tsu03g00656 306 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Tsu03g00656 306 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu03g00656 306 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu03g00656 306 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00656 Tsu-Chr3 5775561 5777599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00656 1 160 Type I MADS-box Gene Family AT5G48670 68.125 1.66e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu03g00656 SRF-TF 2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00656 - - gmx:100813231 325.479