Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00651 ATGTCGCGCGAGAAGCTAGCCGGTTTGTCTCTCGATGACATCTTAGCCAATCAAAAAAGAGCCAACCCTCCACCACCACTGCCAAGCCAACACCCACCACCCTCTAAAAGCCGAACCCTCTTAGACATCATCAAAGACGACGAAACCAACAAAAAAGATCGCAGATCTTGGAAAGCCTTCAAGGATAAGCTTCGGCTCAAGCGCGCTGGCTCTGCTTGGACATCAACAATTCACATTCCAACATCAGACATTCCAATTCAAAATCCAAACGGCAGAAGTTTTTCACAATTCGGTCGTCGTGACTCAGTCCGAGTGCAAAGTCTCCACGACTCGGACATGTCAGCTCAGGCCATGACTCACCAAGTGGAAGACCTCGATCCGCCAAATGAATCTGATGCTCTAGTTTCTAAACCACAATTCACTCGCAAGAGCTCAACCCGTTTAACAGGAGATTCCCCTGAGAATTTGTCCAGTGCAAGAAATCTTCGACAACTCTCACGCACGAATTCCGCCAATGTATCTTCAGAGCCATTTCGAAGAGAGCGTGTGGTGACTTTCCGAGATAGCTTCGACGATGATGAGCCTGGCGATGATCAACTGGATGCGGGCAGCAGGGGATTATCAGCGAGGGAGGCGGTGGCGGCGCAGGAGGCGGCAGAAGCTGCGGCAGAGGAGGAAGAGGCTGAAGCAGGACCTCCAACGATGTCATTGATGGATTTGTTAGGGGAGACCGATAGAGAATTGGGGTTGGAAGGGTCAAGGTATATACtgagtgatgaagatgaagatgaggattattatgatgatgaagaagatgatgaagatggagAAAATGCTTTGGAACAAACATGTTGTATTTGTATGGTGAAGCATAAGGGTGCTGCTTTGGCAGCTTGTGGTCATAGTTTCTGTAGGATGTGTTCAAGGGAGCTTATGGTTGCTAAGGGAAATTGTCCACTTTGTAATAATTTCATTTTAGAGATTCTTGAcattttttga 999 0.4494 MSREKLAGLSLDDILANQKRANPPPPLPSQHPPPSKSRTLLDIIKDDETNKKDRRSWKAFKDKLRLKRAGSAWTSTIHIPTSDIPIQNPNGRSFSQFGRRDSVRVQSLHDSDMSAQAMTHQVEDLDPPNESDALVSKPQFTRKSSTRLTGDSPENLSSARNLRQLSRTNSANVSSEPFRRERVVTFRDSFDDDEPGDDQLDAGSRGLSAREAVAAQEAAEAAAEEEEAEAGPPTMSLMDLLGETDRELGLEGSRYILSDEDEDEDYYDDEEDDEDGENALEQTCCICMVKHKGAALAACGHSFCRMCSRELMVAKGNCPLCNNFILEILDIF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00651 332 MobiDBLite consensus disorder prediction 134 176 - -
Tsu03g00651 332 Pfam Zinc finger, C3HC4 type (RING finger) 281 325 - -
Tsu03g00651 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 332 IPR013083 -
Tsu03g00651 332 SMART ring_2 284 321 IPR001841 -
Tsu03g00651 332 MobiDBLite consensus disorder prediction 106 234 - -
Tsu03g00651 332 CDD RING-HC 284 321 - -
Tsu03g00651 332 MobiDBLite consensus disorder prediction 40 54 - -
Tsu03g00651 332 PANTHER OS01G0917900 PROTEIN 3 332 - -
Tsu03g00651 332 SUPERFAMILY RING/U-box 283 328 - -
Tsu03g00651 332 PANTHER OS01G0917900 PROTEIN 3 332 - -
Tsu03g00651 332 ProSiteProfiles Zinc finger RING-type profile. 284 322 IPR001841 -
Tsu03g00651 332 Coils Coil 209 229 - -
Tsu03g00651 332 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00651 Tsu-Chr3 5726524 5728140 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00651 6 332 C3H Transcription Factor Family AT3G07120 37.158 1.33e-53 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00651 - - gmx:100795449 375.17