Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu03g00650 | ATGACAACTCGAATTGCACCGGGCGTCGGTGCAAATCTCCTCGGCCAACACTCCGCCGAGAGAAACCAAGACGCTACTGCTTACGTCGGCAATCTCGACCCTCAGATATCTGAGGAATTATTGTGGGAGCTTTTTGTTCAAGCTGGTCCCGTAGTTAATGTGTATGTTCCTAAGGATAGAGTGACTAATCAACATCAAGGTTATGGATTTGTTGAATTTCGGAGCGAAGAAGATGCTGATTATGCCATTAAGGTGCTTAACATGATTAAACTTTATGGGAAACCAATTCGTGTAAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTCGGGGCAAACCTTTTCATTGGCAATCTGGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGACACGGGGAATTCGCGAGGCTTTGGCTTCATTAGCTATGATTCATTTGAAGCATCTGATTCGGCTATTGAGGCAATGAATGGACAGTATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACCAAAGGCGAAAGACACGGTACTCCCGCAGAAAGAGTTTTGGCTGCAAGTAATCCAACTGCACAGAAGAGCAGACCTCATACTTTATTTGCTAGTGGACCACCAACACTTCCCAATGCTCCTCAAGCTAATGGTACCATTGCTGCTCCAGCACCTCCCCGACCCTTTTCTAATGGTGTTCCCCCACCTATTCCTGTCATCCATCCACCACCTCCTCAAGCAGCAGCTTTTCAGCCTATGCAGATGCCACCACCTGGACAACAACAATGGCATCAACAGCAGCCAGGTCAACAAATGATGCAACAGGGAATGCCTCCACCTCCAATGCAGCAGTTCAGGCCACCTCACTCGATGCAGATGCCGCCGCCACCTCCACAAGGTATGCAGGGACCTCCAAGGCCTCTTCCACCGCCATCAGTAATGGCAGGCCAGCAACAAGTTTGGCGACCACCGCCACCACCTCAGCAACAGGGTGGACATCCTATGGGATATCCTCAGAACTCAATGCCGCCGCCACCACCTCCCAATCACCATGGAATGCGACCACCTTCAGGTTAA | 1137 | 0.4793 | MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPNAPQANGTIAAPAPPRPFSNGVPPPIPVIHPPPPQAAAFQPMQMPPPGQQQWHQQQPGQQMMQQGMPPPPMQQFRPPHSMQMPPPPPQGMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQGGHPMGYPQNSMPPPPPPNHHGMRPPSG | 378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu03g00650 | 378 | CDD | RRM2_SF3B4 | 111 | 193 | IPR034159 | - | |
| Tsu03g00650 | 378 | CDD | RRM1_SF3B4 | 28 | 100 | IPR034158 | - | |
| Tsu03g00650 | 378 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 191 | IPR000504 | GO:0003723 | |
| Tsu03g00650 | 378 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 28 | 97 | IPR000504 | GO:0003723 | |
| Tsu03g00650 | 378 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 184 | IPR000504 | GO:0003723 | |
| Tsu03g00650 | 378 | Gene3D | - | 112 | 200 | IPR012677 | - | |
| Tsu03g00650 | 378 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 25 | 103 | IPR000504 | GO:0003723 | |
| Tsu03g00650 | 378 | MobiDBLite | consensus disorder prediction | 193 | 378 | - | - | |
| Tsu03g00650 | 378 | MobiDBLite | consensus disorder prediction | 300 | 332 | - | - | |
| Tsu03g00650 | 378 | Gene3D | - | 16 | 111 | IPR012677 | - | |
| Tsu03g00650 | 378 | SMART | rrm1_1 | 113 | 187 | IPR000504 | GO:0003723 | |
| Tsu03g00650 | 378 | SMART | rrm1_1 | 26 | 99 | IPR000504 | GO:0003723 | |
| Tsu03g00650 | 378 | SUPERFAMILY | RNA-binding domain, RBD | 25 | 195 | IPR035979 | GO:0003676 | |
| Tsu03g00650 | 378 | PANTHER | SPLICING FACTOR 3B SUBUNIT 4 | 1 | 359 | - | - | |
| Tsu03g00650 | 378 | PANTHER | TRANSFORMER-2-RELATED | 1 | 359 | - | - | |
| Tsu03g00650 | 378 | MobiDBLite | consensus disorder prediction | 340 | 378 | - | - | |
| Tsu03g00650 | 378 | MobiDBLite | consensus disorder prediction | 247 | 272 | - | - | |
| Tsu03g00650 | 378 | MobiDBLite | consensus disorder prediction | 275 | 298 | - | - | |
| Tsu03g00650 | 378 | MobiDBLite | consensus disorder prediction | 208 | 236 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu03g00650 | Tsu-Chr3 | 5718971 | 5726016 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu03g00650 | 16 | 98 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 36.145 | 3.10e-06 | 47.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu03g00650 | K12831 | - | gmx:100791039 | 508.834 |