Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00643 ATGGGAAGACAACCTTGTTGTGACAAAGTTGGTTTGAAGAAAGGACCATGGACTGCAGAAGAAGATAAAAAGCTCATAAATTTCATCCTTACTAATGGCCAATGTTGTTGGAGAGCTGTTCCTAAAttagcagGGTTGTTAAGGTGTGGAAAAAGTTGTAGACTCAGATGGACAAATTATCTAAGGCCAGACCTAAAGAGAGGACTTTTATcagaatatgaagaaaaaatggTCATTGATCTTCATGCTCAACTTGGCAATAGaTGGTCTAAAATTGCTTCTCATCTACCTGGACGAACCGATAATGAGATTAAGAATCATTGGAATACTCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCAGTTACACACAAGTTACTCTCTAATGCAATTGATcaaacaaaatctgaaaaacAACAACCATTgcaacaagaacaagaacatcAACAAGAATCTTCTTCCCCTATTGAAAATGAGAATGACAAAAACAAGGAACCTCAAAAGCAAGAAACATCATTTGAATCATCAACAATCACTGAAGTCAAAGAACAAGACCAAGTTATGACACCACTTTTTGATTCATTGGAACTAATGAATGAGTTCTTGATAGAAGAAGTTCCAATAATCAACCCAAATGAAATTCTATGTGttccttcatcttcatcaaacacaacatcaacatcatcatcttcaaattcaaattcatctaACTTCCTTGAAGATTTGCTTCTCCCTGATTTTGATTGGTCACATAATTTTaatgttaataataatattgaaaataatagtaactataatgaaaatagtaataataatgataatattaataTGGCATTGTGGGATGATGACTTTATTAGAAGTTGGGACTTTGTGatcaatgatgatgatgatggtgacaGAAAGCAAGTGTTTGATGCTCCTCATAATCAGTATCCAAAAGTGATTATGGATTCAGAATCATGGGCCTATggaatgttttga 987 0.2746 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKLLSNAIDQTKSEKQQPLQQEQEHQQESSSPIENENDKNKEPQKQETSFESSTITEVKEQDQVMTPLFDSLELMNEFLIEEVPIINPNEILCVPSSSSNTTSTSSSSNSNSSNFLEDLLLPDFDWSHNFNVNNNIENNSNYNENSNNNDNINMALWDDDFIRSWDFVINDDDDGDRKQVFDAPHNQYPKVIMDSESWAYGMF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00643 328 MobiDBLite consensus disorder prediction 154 171 - -
Tsu03g00643 328 SMART sant 66 114 IPR001005 -
Tsu03g00643 328 SMART sant 13 63 IPR001005 -
Tsu03g00643 328 CDD SANT 16 61 IPR001005 -
Tsu03g00643 328 MobiDBLite consensus disorder prediction 135 153 - -
Tsu03g00643 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu03g00643 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu03g00643 328 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Tsu03g00643 328 Gene3D - 11 67 - -
Tsu03g00643 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu03g00643 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu03g00643 328 CDD SANT 74 112 IPR001005 -
Tsu03g00643 328 Gene3D - 71 116 - -
Tsu03g00643 328 MobiDBLite consensus disorder prediction 135 184 - -
Tsu03g00643 328 PANTHER MYB TRANSCRIPTION FACTOR 1 301 - -
Tsu03g00643 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu03g00643 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu03g00643 328 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00643 Tsu-Chr3 5618644 5621017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00643 1 328 MYB Transcription Factor Family AT5G16600 47.042 3.92e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu03g00643 Myb_DNA-binding 9.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00643 K09422 - gmx:100803624 469.929