Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00640 ATGGCTTCTTCATTGGATATGTCACTTGATGATAGAATTAAGAACAACAGGAGTATCCGAGGCAGAGGTAGAGGACGTGGCAAAGCCCTTTCTGGCCGTGGAAGTGGAACTGTAGGTGGTGGAAGAAGGGCTAGTGCTGTTAATGGGAGAAGAGTGGCTGGTAATGGTGGAAGAACAACCGGCGCTGTTCGTAGAGGCCCACTTATGGTCAACACTCGCCCATCCTCTTATGCTATTGCCAAGTCTATTCGCAGAACCAAGGCTTTTCCATGGCAGAACGATTTATTTGAGGATAGCCTTAGAGCTGCAGGAATACAAGGAGTAGAAATTGACACAAAGTTGTATGTCTCCAACTTAGACCGGGGAGTTACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGGGACTTGAAGCGCTATGCTGTTCATTATGACAAGAATGGACACCCAACTGGTTCGGCTGAAGTTGTCTATAATAGAAGAAGTGATGCATTTGCTGCTCTTAAACGGTATAACAATGTGCTTTTGGATGGAAAGCCCATGAAGattgagattgttggaacaaattCAGAATTGCCTGTAACTGCACGGGTGAATGTCTCTGCGATGAATGGACAGAGAAAGAGGACAGTTGTAATGGCGTAA 648 0.4429 MASSLDMSLDDRIKNNRSIRGRGRGRGKALSGRGSGTVGGGRRASAVNGRRVAGNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRRTKAFPWQNDLFEDSLRAAGIQGVEIDTKLYVSNLDRGVTNEDIRELFSELGDLKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTNSELPVTARVNVSAMNGQRKRTVVMA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00640 215 SUPERFAMILY RNA-binding domain, RBD 106 186 IPR035979 GO:0003676
Tsu03g00640 215 SMART rrm1_1 113 185 IPR000504 GO:0003723
Tsu03g00640 215 Gene3D - 108 188 IPR012677 -
Tsu03g00640 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Tsu03g00640 215 MobiDBLite consensus disorder prediction 1 65 - -
Tsu03g00640 215 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 214 - -
Tsu03g00640 215 PANTHER THO COMPLEX SUBUNIT 4C 1 214 - -
Tsu03g00640 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Tsu03g00640 215 CDD RRM_THOC4 112 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00640 Tsu-Chr3 5589622 5594304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00640 114 192 Eukaryotic Initiation Factors Gene Family AT2G23350 36.709 3.12e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00640 K12881 - gmx:100801491 311.227