Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00617 atgaagagaGATCACCAAGAAAGCTATAGTGGAGGAGTCAACAtgaacaacaataacaacaacaccaataataacaacaacaacctcaacaaaaacaaaaactttggTGAATGTTCATCAATGCAGAACAACAACGGAAAACAAAACATGTGGAGAGAAGAAAAAGACAACGGTGGTGATATGGATGAGTTATTAGCAGCATTAGGTTACAAAGTTCGTTCATCAGACATGGCTGATGTAGCTCAAAAGCTTGAACAACTTGAGATGGTTATGGGTAGTGCTCAAGAAGAAGGAATAAACCATCTTTCTTCTGATACAGTTCACTATGACCCAACCGATCTATATTCATGGGTTCAAACCATGCTCACTGAACTCAACCCTTCAACAACCGATTCACAAATCAATGACCCATTAAAcccttcttcttcaatcttcaacgATGATTCTCAATATGATCTTAGCGTTATTCCTGGAATGGCCGCATACCCACCACAAAACCATACCCAAAACAATGAAATTGAAGTTTCCAACGTTTCCAACAGTAACAAAAGGTTGAAAACATGGGTGGAGGAATCAGAATTGGAAGATGTTTTACCGGTGATATCGCCGCCGGCGGAAACTACAAGACCGGTTGTTCTTGTTGATTCACAAGAAACTGGTGTTCGTCTCGTTCATACTTTGTTAGCTTGTGCTGAAGCTATTCAACAAGAGAATCTGAAACTTGCTGATGCACTTGTGAAACATATTGGAGCTTTAGCATCGTCACAAACCGGTGCCATGAGAAAAGTTGCTTCCTATTTCGCACAAGCACTTGCTCGGAGAATATACGGAATTTACCCAGATGAAACAATCGATTCATCTTTCTCTGATGTTCTTCACATGCACTTTTATGAATCTTCACCGTATCTGAAATTCGCTCATTTCACTGCAAATCAAGCTATTCTCGAAGCTTTCGCCGGTGCCGGAAGAGTCCACGTCATCGATTTTGGTCTCAAACAAGGTATGCAATGGCCAGCACTTATGCAAGCACTTGCATTACGTCCTGGTGGTCCACCAACTTTCCGGTTAACCGGAATCGGACCGCCGCAACCCGATAACACCGACGCTTTACAACAAGTGGGTTGGAAATTAGCTCAGCTTGCTCAAACAATCGGTGTTCAGTTCGAATTTCGTGGATTCGTTTGTAACAGTTTAGCGGATCTTGACCCGAATATGCTTGAAATCCGACCCGGTGAAGCTGTTGCTGTTAACTCCGTTTTCGAACTTCACACTATGTTAGCCCGACCCGGATCCGTTGATAAAGTTCTCAACACTGTTAAGAAGATTAACCCTAAAATCATAACCATCGTTGAGCAAGAAGCGAATCATAACGGACCGGTTTTCGTAGACCGGTTCACGGAAGCTCTACATTATTACTCAAGTTTATTCGATTCacttgaaggttcttgttctaATAATTCTAACTCGACCGGGTCCGGTTCAGTTAATCAGGATTTATTGATGTCGGAGCTTTATTTGGGGAGACAGATATGTAACGTGGTGGCTTATGAAGGAGTAGACCGGGTTGAAAGACATGAGACATTGAACCAGTGGCGGTCGAGAATGGGTTCGGCCGGTTTTGATCCGGTTCATTTGGGTTCTAATGCTTTTAAACAAGCAAGTACTTTATTGGCTTTGTTCGCCGGCGGTGATGGATATAGGGTGGAGGAAAATAATGGGTGTCTTATGCTTGGGTGGCACACGAGGTCACTCATTGCTACTTCAGCATGGAAGCTTCCACTCAGTGAGTCCAAGTGA 1797 0.4062 MKRDHQESYSGGVNMNNNNNNTNNNNNNLNKNKNFGECSSMQNNNGKQNMWREEKDNGGDMDELLAALGYKVRSSDMADVAQKLEQLEMVMGSAQEEGINHLSSDTVHYDPTDLYSWVQTMLTELNPSTTDSQINDPLNPSSSIFNDDSQYDLSVIPGMAAYPPQNHTQNNEIEVSNVSNSNKRLKTWVEESELEDVLPVISPPAETTRPVVLVDSQETGVRLVHTLLACAEAIQQENLKLADALVKHIGALASSQTGAMRKVASYFAQALARRIYGIYPDETIDSSFSDVLHMHFYESSPYLKFAHFTANQAILEAFAGAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVQFEFRGFVCNSLADLDPNMLEIRPGEAVAVNSVFELHTMLARPGSVDKVLNTVKKINPKIITIVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGSCSNNSNSTGSGSVNQDLLMSELYLGRQICNVVAYEGVDRVERHETLNQWRSRMGSAGFDPVHLGSNAFKQASTLLALFAGGDGYRVEENNGCLMLGWHTRSLIATSAWKLPLSESK 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00617 598 MobiDBLite consensus disorder prediction 9 48 - -
Tsu03g00617 598 Gene3D - 60 125 IPR038088 -
Tsu03g00617 598 Coils Coil 77 97 - -
Tsu03g00617 598 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 56 591 IPR005202 -
Tsu03g00617 598 Pfam GRAS domain family 223 591 IPR005202 -
Tsu03g00617 598 MobiDBLite consensus disorder prediction 1 57 - -
Tsu03g00617 598 SMART DELLA_2 62 135 - -
Tsu03g00617 598 Pfam Transcriptional regulator DELLA protein N terminal 62 128 IPR021914 -
Tsu03g00617 598 ProSiteProfiles GRAS family profile. 214 591 IPR005202 -
Tsu03g00617 598 PANTHER DELLA PROTEIN RGL1 56 591 IPR030006 GO:0003712|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00617 Tsu-Chr3 5378729 5381007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00617 1 592 GRAS Transcription Factor Family AT2G01570 59.223 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu03g00617 GRAS 1.6e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00617 K14494 - gmx:100799695 887.1