Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00615 ATGGAAAACTTGTTGGGACTGATCAAAATTCATGTTCAAAGAGGTGTTAATCTTGCTATTAGGGATTTAGTCAGCACTAGCAGTGATCCTTATGTTGTCATCAACATGGGAAAACAGAAGCTGAAGACTAAGGTAGTGAAGAAGAATCTGAATCCTGAGTGGAATGATGACTTGACTTTATCCATTTCAGATCTTCATACTCCAATCCATCTACATGTGTATGACAAGGACAGCTTTACCATGGACGACAAAATGGGGGATGCCGAAATCGATATCGGTCCATTTGTCGAAGCAGTAAAGATGCGGTTGGAAGGTTTACCAAATGATACTATAGTTACAAGAGTGCAACCTAGCAGACAGAATTGCTTAGCAGAAGAGAGTCACATTGTTTATAAAGATGGCAAAGTTTTCCAAAACATGGTTCTTAGACTAAGAAATGTTGAATCTGGTGAAGTGGAGCTTCAATTGCATTGGATTGACATTCCTGGTTCAAAGGGTCTAGTACTCAACAATTAtctcaagcacacaacaaacCCTTCAAAACTCTGGGAAGTAAAATCACTTTATAATGGAAATAAGTATTGCAAGGTGTCATCTAGAAGCACAGGGGATATTCTTTTCCAACATTTTGAGAACAATAGGAAGGGAAAATTCTCAGAAACTTCCATAAGGTCATTTTTCTGTCGAACACATTCAATAGCAACTAGTTTAGAGGGATTTGCATCAGCATCATTACAATCCGGTGATGATCCTAACGAGGATATGGATCCATCTACAGACTCAGAAGACGAGAGCTTGTCACAACCACATACCAGTGAACAGATAAAGGCATTGCTTGCTGATACTGAAAGAGCAAAACTCACTAAGAAGCTTAGTGAAGCCAACCAACAAAATCGGTTCCTCAAAAGACAGTTGTATATAAAGGAGGATGCACTGCTAAAGTTTAAAAGTGAACTTGCTGTCATGGAGCTTGAAGTTCAGGCATTGGCCAGACTAGCAGAAGAAATAGCTAAATCTGGTATTCCAAATGGTTCAAGAAAGATCAATGGAAAGTACATTCATACTCATCTTGTTGCTAGATTAAAAGCTGTACATGAACAATTGAATGAGCAAATAAAGGATGTTGATGTGGCACAATCGAAGGAGGTTTCCGTATTTTGGGCCGGCATGGCTGAGAGTGTGCAAGTTATGGGAAGCTTTGATGGTTGGAGTCAAGGAGAGCACCTTTCACCAGAGTATACAGGTTCCTACACAAGATTCTCAACAACATTGATGCTCAGACCTGGAAGGTATGAAGTAAAATTCTTTGTAGATGGTGAATGGCACCTATCTCCAGAGTTACCAGTTACTGGTGAAGggttaatgaaaaataatttgttaattgTTGAGTGA 1392 0.3836 MENLLGLIKIHVQRGVNLAIRDLVSTSSDPYVVINMGKQKLKTKVVKKNLNPEWNDDLTLSISDLHTPIHLHVYDKDSFTMDDKMGDAEIDIGPFVEAVKMRLEGLPNDTIVTRVQPSRQNCLAEESHIVYKDGKVFQNMVLRLRNVESGEVELQLHWIDIPGSKGLVLNNYLKHTTNPSKLWEVKSLYNGNKYCKVSSRSTGDILFQHFENNRKGKFSETSIRSFFCRTHSIATSLEGFASASLQSGDDPNEDMDPSTDSEDESLSQPHTSEQIKALLADTERAKLTKKLSEANQQNRFLKRQLYIKEDALLKFKSELAVMELEVQALARLAEEIAKSGIPNGSRKINGKYIHTHLVARLKAVHEQLNEQIKDVDVAQSKEVSVFWAGMAESVQVMGSFDGWSQGEHLSPEYTGSYTRFSTTLMLRPGRYEVKFFVDGEWHLSPELPVTGEGLMKNNLLIVE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00615 463 PANTHER PROTEIN PTST, CHLOROPLASTIC 195 463 - -
Tsu03g00615 463 SMART C2_3c 7 104 IPR000008 -
Tsu03g00615 463 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 93 IPR035892 -
Tsu03g00615 463 Pfam C2 domain 7 94 IPR000008 -
Tsu03g00615 463 Gene3D C2 domain 4 177 IPR035892 -
Tsu03g00615 463 Coils Coil 358 378 - -
Tsu03g00615 463 Pfam Glycogen recognition site of AMP-activated protein kinase 384 452 IPR032640 -
Tsu03g00615 463 Gene3D Immunoglobulins 373 462 IPR013783 -
Tsu03g00615 463 CDD E_set_AMPKbeta_like_N 385 462 - -
Tsu03g00615 463 CDD C2_ArfGAP 5 150 - -
Tsu03g00615 463 SUPERFAMILY E set domains 383 462 IPR014756 -
Tsu03g00615 463 MobiDBLite consensus disorder prediction 244 272 - -
Tsu03g00615 463 ProSiteProfiles C2 domain profile. 1 105 IPR000008 -
Tsu03g00615 463 Coils Coil 284 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00615 Tsu-Chr3 5350108 5358247 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00615 40 181 C2H2 Transcription Factor Family AT1G70790 55.556 5.26e-49 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00615 - - gmx:100806282 370.933