Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00610 atgatgGAGGGTGAAACTGAATCATCCACTGATACAAGTCATACAACCAACAACAtttccaacacacattcatcatcttcattagTTGTTtctcacaacaacaacaacagtagcaacaaaaacatcaaatttagaacctttttaagaaaaaagatgtgggaatttggttttttatgtATTGGAAAAAACCCTTCAAAAAGAAACTTTAGTAGTAGTGATTaccaaaacaatgaaaatggtgACAAAAAGATGAATTTAGAGCATAACAAAGCTTGGTTGTTAGCTGAGTCTGGTGGGTGTGGAGCAGAATTGAACAATGTTGATCCTCAATCTGTTCATTCTTCTTTCAGATTTAGTTTCTGTTCTCAAGTTGAGTTAGAGtctttgaatttgaattcttcTTCTGCTGCAACTGTTTTGATGGTGAATTTGGATAATGGTGTTAGTGAATCTCTTGTTAAAGAGTTGAAATTGAGGAGAATTGAGTCTTTGGAGAAGACTATTTCTCCCGTTGCTCACTCTTTGATTAGGTTTAGCTATGGTGAAATTGTTAATGCTACTAGGAATTTCTCCAAAGGTAGGGTGTTGGGGAGAGGAGCATTGAGCTGTGTTTATAGGGGAAGAGTTGGACTTTTGAGAACTGTTGTAGCAATTAAACGATTGGACAAAGAAGATAAGGAGTCTGCAAAAGCCTTTTGTAGAGAATTGATGATTGCTAGTTCTCTTCATAATCCAAATGTTGTTCCTCTTGTTGGTTTTTGTATCGACTCTGAGGAAGGTTTGTTTTTGGTCTACAAGTATGTCTCGGGTGGAAGCTTGGAGCGACACTTGCATGGGAGGAAGAATGGTGGTAAGGGTAATTCAACACTTCCATGGTCGGCAAGGTACAAGGTTGCAATTGGGATTGCAGAAGCTATAGCTTATTTGCATAGTGGAACTGAAAGATGTGTTGTTCATCGAGACATTAAGCCCTCTAACATTCTGCTTTCCTCTAAGAAGACTCCAAAGTTGTGTGATTTCGGATTAGCGACATGGACATCTGCACCTTCAGTTCCTTTTCTTTGCAAAACTGTTAAAGGAACATTTGGATATTTGGCTCCAGAGTATTTCCAACATGGGAAAATATCAGATAAGACTGATGTTTACGCTTTTGGAGTGGTTTTATTGGAACTCATAACTGGCCGGAAaccaattgaaataaaaagGTCTCCAGGAGAGGAGAATTTAGTCTTATGGGCTAAACCTTATCTACAAAAGGGGAAAGGAGCCATTGAAGAGTTGATTGATCCTCAACTGAAGTGCAATTTGCGATTCTCAAATCAAATCGGTAGAATGATTGAAGCAGCAGCTGCATGTGTAACAAATGAAGAATCTAGGAGACCTGGCATACATGAGGTTATTGCAATACtgaaaggtgaagaagaaaTTGTTTTCTCTAAAAGAAAAAAGTCGAGTTTTCTTGGGAATGGATGCGTGATTGATTGTTATTCTCAATTACAACAATCGAGCGAGATGAAAAGTCACTTGGCTTTGGCAATGCTTGGAGTTTCAGAGTTTGAGGATGATGATTATCTATATGTATGTTAA 1587 0.3403 MMEGETESSTDTSHTTNNISNTHSSSSLVVSHNNNNSSNKNIKFRTFLRKKMWEFGFLCIGKNPSKRNFSSSDYQNNENGDKKMNLEHNKAWLLAESGGCGAELNNVDPQSVHSSFRFSFCSQVELESLNLNSSSAATVLMVNLDNGVSESLVKELKLRRIESLEKTISPVAHSLIRFSYGEIVNATRNFSKGRVLGRGALSCVYRGRVGLLRTVVAIKRLDKEDKESAKAFCRELMIASSLHNPNVVPLVGFCIDSEEGLFLVYKYVSGGSLERHLHGRKNGGKGNSTLPWSARYKVAIGIAEAIAYLHSGTERCVVHRDIKPSNILLSSKKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKISDKTDVYAFGVVLLELITGRKPIEIKRSPGEENLVLWAKPYLQKGKGAIEELIDPQLKCNLRFSNQIGRMIEAAAACVTNEESRRPGIHEVIAILKGEEEIVFSKRKKSSFLGNGCVIDCYSQLQQSSEMKSHLALAMLGVSEFEDDDYLYVC 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00610 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Tsu03g00610 528 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1 17 526 - -
Tsu03g00610 528 Pfam Protein kinase domain 191 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00610 528 Gene3D Phosphorylase Kinase; domain 1 174 267 - -
Tsu03g00610 528 SUPERFAMILY Protein kinase-like (PK-like) 170 470 IPR011009 -
Tsu03g00610 528 MobiDBLite consensus disorder prediction 1 35 - -
Tsu03g00610 528 PANTHER OS01G0750732 PROTEIN 17 526 - -
Tsu03g00610 528 ProSiteProfiles Protein kinase domain profile. 190 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00610 528 SMART serkin_6 190 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00610 528 Gene3D Transferase(Phosphotransferase) domain 1 268 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00610 Tsu-Chr3 5320555 5323988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00610 178 476 Trihelix Transcription Factor Family AT1G70460 42.857 2.19e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Tsu03g00610 Pkinase 6.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00610 - - adu:107481060 822.387