Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00603 atggACTCTCCTCATTCACCTTCttcctgttcatcttcttcatccacATGTTCATTTGAAGGACACGCCACCGACACAATCTATTTAGAAACGGAAGAGCCACAAACGCCGTTAGCCGTTCGACGTGCTCTTCAGCTTCTCAAATCCGGCGTTCCGGAGTTACGGATTCAAGCCGCGCGTGATATTCGGAAACTCACCAAAACTTCACACCGGTGTCGGCGTCAGCTTTCTGAAGCTGTCGGTCCACTCGTTTCTATGCTCCGAGTCGACTCGCCCGAGTCACATGAACCTGCGCTTCTTGCTTTGCTTAATCTCGCTGTTAAAGATGAAAAGAATAAAATCAATATTGTGGAGGCCGGAGCATTAGAACCAATACTTAGTTTCCTCAAGTCACAAAATCCAAATCTGCAGGCGTCTGCAACTGCAGCTTTGCTCACACTATCAGCCTCTTCAACCAACAAACCAATTATTAGTGGTTGTGGCGCCATTCCCCTTCTTGTGGAGATTCTTAAAGATGGAAGCCCACAGGCAAAAGCCGATGCAGTTATGGCTCTTGCTAATTTATCAACATATCCTGATATTCTTAGCATTATTCTCAAAACAAATCCAATCCCTTTCATTGTTGACATCCTCAAAACTTGCAAAAAGTCCTCAAAAACAGCTGAAAAATGCTGTGCTTTGATAGAGCCCTTGGTGGATTACGACGAATGCAGAACTTCCTTGATATCTGAGGAAGGTGGGATTCTCGCAGTCGTGGAGGTTCTCGAAAATGGCACTCTCCAAAGTAGGGAACATGCTGTTGGAGCACTACTGACAATGTGCCAAAGCGATCGATGTAAATACAGGGAACCAATTCTTAAAGAAGGTGTCATTCCAGGACTACTTGAGCTCACTGTTCAAGGAACACCAAAGTCTCAGACAAAAGCGCGCACCCTTTTGCAACTACTAAGAGAATCTCCTTATCCAAGATCTGAAATTCAACCCGACACTCTTGAGAATATAGTATGCAACATCATATCTCAAATTGATGGGGATGAACAATCTGGTAAAGCAAAGAAGATGTTGGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTCTCAGACATTTACAGCAAAGGGCGTTGGTATGCACCCCAAGTGATCTTCCCATAGCTGGCTGTACTTCTGAAGTTTCTTTTAAGTAA 1185 0.4354 MDSPHSPSSCSSSSSTCSFEGHATDTIYLETEEPQTPLAVRRALQLLKSGVPELRIQAARDIRKLTKTSHRCRRQLSEAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPILSFLKSQNPNLQASATAALLTLSASSTNKPIISGCGAIPLLVEILKDGSPQAKADAVMALANLSTYPDILSIILKTNPIPFIVDILKTCKKSSKTAEKCCALIEPLVDYDECRTSLISEEGGILAVVEVLENGTLQSREHAVGALLTMCQSDRCKYREPILKEGVIPGLLELTVQGTPKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDEQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCTSEVSFK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00603 394 Pfam Armadillo/beta-catenin-like repeat 110 148 IPR000225 GO:0005515
Tsu03g00603 394 SUPERFAMILY ARM repeat 39 344 IPR016024 -
Tsu03g00603 394 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 120 162 IPR000225 GO:0005515
Tsu03g00603 394 Gene3D - 22 377 IPR011989 -
Tsu03g00603 394 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 24 377 - -
Tsu03g00603 394 PANTHER U BOX DOMAIN-CONTAINING 24 377 - -
Tsu03g00603 394 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 189 IPR000225 GO:0005515
Tsu03g00603 394 SMART arm_5 150 190 IPR000225 GO:0005515
Tsu03g00603 394 SMART arm_5 234 275 IPR000225 GO:0005515
Tsu03g00603 394 SMART arm_5 66 107 IPR000225 GO:0005515
Tsu03g00603 394 SMART arm_5 109 149 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00603 Tsu-Chr3 5194761 5198555 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00603 40 317 U-box Gene Family AT2G23140 32.500 1.38e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00603 - - gmx:100809684 633.254