Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00595 ATGGGTGGCAGCTTCAGTGCAAGGTTCACTCCATATAATGGTTTGAAATATTCAAAGCTTGACAGTAGAGAAGATGATGTTTTATCTATGCTTCAAACTTCTAGGACTTTGAAGTGCTTTGCATTAAAGGAGATACAAACTGCGACAAGGAATGCAGTTCCAGATATTCAGGAAGGCGAGTTTTGTTGTGTAAAGGGATGGATCGATGAGCATACATTAGCCCCCACTAAACCAAATTCTGGTTTAGCAATTTCTGTGAAGAAGCTTAACCGTGTGACCCCCCAGGAACGCAGTGAATGGTTGAGAAAAATCAACAACATGGGACAGCTGAGTCATCCTAATCTTGTGAAATTGATTGGGTATTGCTTAGAGGATGGTTACCCTATTTTGGTATATGAATTTTTGGCCAATGGAAGTTTCGACAATCATCTGTTTAAAAGGTCTTCTAACATTCAGCCACTCTCTTGGTCAGTCAGAATGAAGATTGCACTTGATGCTGCAAAGGGTCTGGCATTTCTTCACAGTAATGAAGTCGAAGTGATGCATGGAGATTTCAAAACTTCTAATATCTTGATTGATTCTAATCACAACGCAAAACTATCCGATTTTGGGTTGGATAAGTTTAGAGATGAAGAAAGTGATGCGAACAGTTGGGCAAGGTTAGCTATAAATTGCCCCCATCCCCGCAGATACGTAGCACCTGACTATTGGATGACAGGTCGCCAAACCAAAAGGAGTgatatatatagttttggagTTGTTCTGCTGGAAATTATGTCTGGCAAATGTGCACATGCTAAAAAATGGCCACAATGCGAATACAGATTAGTTGAATGGAACAAGTCTAAGCCGTTACTCATCGACAAACAAAAGCTCTTCCAATTTATGGATTCCTATTTAGAAGGCCGATATTCCCCGCGTGAAGCAATGAAAGTTGCTAGCATTGCAATTCAGTGTCTGTCTTTTGATGCAAAATATAGACCAAACATTGATGAAGTGGTGAGATCATTGGAACAACTATAG 1023 0.3959 MGGSFSARFTPYNGLKYSKLDSREDDVLSMLQTSRTLKCFALKEIQTATRNAVPDIQEGEFCCVKGWIDEHTLAPTKPNSGLAISVKKLNRVTPQERSEWLRKINNMGQLSHPNLVKLIGYCLEDGYPILVYEFLANGSFDNHLFKRSSNIQPLSWSVRMKIALDAAKGLAFLHSNEVEVMHGDFKTSNILIDSNHNAKLSDFGLDKFRDEESDANSWARLAINCPHPRRYVAPDYWMTGRQTKRSDIYSFGVVLLEIMSGKCAHAKKWPQCEYRLVEWNKSKPLLIDKQKLFQFMDSYLEGRYSPREAMKVASIAIQCLSFDAKYRPNIDEVVRSLEQL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00595 340 Gene3D Transferase(Phosphotransferase) domain 1 135 340 - -
Tsu03g00595 340 PANTHER OS01G0588500 PROTEIN-RELATED 36 338 - -
Tsu03g00595 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Tsu03g00595 340 SUPERFAMILY Protein kinase-like (PK-like) 35 338 IPR011009 -
Tsu03g00595 340 Gene3D Phosphorylase Kinase; domain 1 27 134 - -
Tsu03g00595 340 Pfam Protein tyrosine and serine/threonine kinase 56 337 IPR001245 GO:0004672|GO:0006468
Tsu03g00595 340 PANTHER APK1B, PUTATIVE-RELATED 36 338 - -
Tsu03g00595 340 ProSiteProfiles Protein kinase domain profile. 50 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00595 Tsu-Chr3 5146547 5148426 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00595 33 340 Receptor kinase-like Gene Family AT3G58690 37.898 7.77e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu03g00595 PK_Tyr_Ser-Thr 6.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00595 - - mtr:MTR_3g067765 400.593