Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00594 ATGATCATGGTTTGCTGCTTTAGGGTCAAAGCTGAGACTCCTACACATAATGATTTGAACTCAAAGGTTGTTAGGAGAGAAGAGGATGGTGAGATATTACAATCCAACAATTTGAAGTGTTTCACAATCAATGAGTTAAAAACTGCTACTAGGAACTTTCATCTAGATGGTCTAGTTGGTGAAGGTGGATTTGGTTCTGTATTTAAGGGGTGGATCAATGATGAACACACACTAGCCCCTACTAAACCAGATACTGGTTTTGTCGTTGCAGTGAAGAGGCTTAACCAAGAAAGTTACAAAACAGATAGTGAATGGTTGGCAGAAATCAATTACCTGAGACAGCTTCATCATCCTAATCTTGTGAAATTGGTTGGTTACTGCTTAGAGGATGATTACCGGATTTTGGTATATGAATTCATGACAAAAGGAAGTTTGGATAATCATTTGTTTAGAaCCGATGCGGCTTCAAACTTTCAGCCACTCTCTTGGAAAATTCGTATGAAGATAGCCCTCGATGCTGCTAAAGCTCTTGCATTTCTTCACAGCGATGAAGTCGAAGTGATATACGGAGACTTCAAAACTTCTAAACTCTTGATTGACGATAATTACAATGCAAAATTATCCATTCTGGATAGAGGTCAACTAACTAAAAAGAGTGATGTATACAAATTTGGGGTTGTTCTTCTGGAAATGATGTTAGGGAAACGTGCATTCGATAAAAACAGGCCATTTAGGGAACAAAATTTAGTTGATTGGGCCAAGCCATTACTCATCAAGAAACACAAGATCTCTAAAGTCATGGATTATCATATAGAAGGCCAATATTCACCGCGTGAAGCAATGAAAGTAGCTCAGATTGTAAATAAATGCCTTTCTGATATGCCAACATGTAGACCAAACATGGACGAAGTGGTGAGGGTCAAAGCTGAGAGTAATGATCTTACACATGATGGTTTGAATTCAAAGGTTGAGGTTGTTTGGAGAGAAGAGGATGGCGAGATATTACAATCCAACAATTTGAAGTGTTTCACAATCAATGAGTTAAAAACTGCTACAAGGAACTTTCATCTAGATGGTCTAGTTGGTGAAGGTGGATTTGGTTCTGTATTTAAGAGATGGATCAATGATGAACACACACTAGCCCCTACTAAACCAGATACTGGTTTTGTCATTGCTGTCAAGAGGCTTAACCAAGAAAGCTACAAAACAGATAGTGAATGGTTGGCAGAAATCAATTACCTGAGACAGGATCATCATCCTAATCTTGTGAAACTAATTGGTTACTGCTTAGAGGATGAACGCCGGATTTTAGTATATGAGTTTTTGACCAAGGGAAGTTTGGATAATCATTTGTTTAGAaATGCGGCTCCAAACTTTCAGCCACTCTCTTGGAAAATTCGAATGAAGATAGCCCTCGATGCTGCTAAAGCTCTTGCATTTCTTCACAGCAATGAAGTCGAAATGATATATGGAGACTTCAAAACTTCTAAAATCTTGATTGACGATAACTACAACGCAAAATTATCCGTTTTTGGATTGCAAAAAGATACATCAGAAGAAAATGATATGATCGACTTAGAATTTGAAATTCTATATACGGACACCGTTTGTCAAGCACCTAAGATTGTGGATAGAGGTCAACTAACTAAAAAGAGTGATGTGTACAAATTTGGGGTTGTTCTTCTGGAAATGATGTCAGGGAAACGTGCATTCGATGAATCGAGGCCAATTAGGGAACAAAATTTAGTTCATTGGGCCGAGCCATTACTCATCAATCAACACAAGATCTCTAAAGTCATGGATTCTCATATAGAAGGCCAATATTCACCGCGTGAAGCAACGATAGTAGCTCATATCGTAAATAAATGCCTGTCTTATATGCCAACACATAGACCAAAGATGGACGAAGTGGTGAAATTATTGGAGCTACTTCAGGATTCCAAGGACACAGTTGGTGAAGTGGACAATCCTTAG 1974 0.3835 MIMVCCFRVKAETPTHNDLNSKVVRREEDGEILQSNNLKCFTINELKTATRNFHLDGLVGEGGFGSVFKGWINDEHTLAPTKPDTGFVVAVKRLNQESYKTDSEWLAEINYLRQLHHPNLVKLVGYCLEDDYRILVYEFMTKGSLDNHLFRTDAASNFQPLSWKIRMKIALDAAKALAFLHSDEVEVIYGDFKTSKLLIDDNYNAKLSILDRGQLTKKSDVYKFGVVLLEMMLGKRAFDKNRPFREQNLVDWAKPLLIKKHKISKVMDYHIEGQYSPREAMKVAQIVNKCLSDMPTCRPNMDEVVRVKAESNDLTHDGLNSKVEVVWREEDGEILQSNNLKCFTINELKTATRNFHLDGLVGEGGFGSVFKRWINDEHTLAPTKPDTGFVIAVKRLNQESYKTDSEWLAEINYLRQDHHPNLVKLIGYCLEDERRILVYEFLTKGSLDNHLFRNAAPNFQPLSWKIRMKIALDAAKALAFLHSNEVEMIYGDFKTSKILIDDNYNAKLSVFGLQKDTSEENDMIDLEFEILYTDTVCQAPKIVDRGQLTKKSDVYKFGVVLLEMMSGKRAFDESRPIREQNLVHWAEPLLINQHKISKVMDSHIEGQYSPREATIVAHIVNKCLSYMPTHRPKMDEVVKLLELLQDSKDTVGEVDNP 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00594 657 SUPERFAMILY Protein kinase-like (PK-like) 37 306 IPR011009 -
Tsu03g00594 657 PANTHER KINASE 1B 212 313 - -
Tsu03g00594 657 PANTHER KINASE 1B 329 649 - -
Tsu03g00594 657 PANTHER KINASE 1B 26 208 - -
Tsu03g00594 657 SUPERFAMILY Protein kinase-like (PK-like) 333 647 IPR011009 -
Tsu03g00594 657 Gene3D Phosphorylase Kinase; domain 1 23 139 - -
Tsu03g00594 657 Gene3D Transferase(Phosphotransferase) domain 1 209 326 - -
Tsu03g00594 657 Gene3D Transferase(Phosphotransferase) domain 1 442 655 - -
Tsu03g00594 657 ProSiteProfiles Protein kinase domain profile. 53 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00594 657 ProSiteProfiles Protein kinase domain profile. 355 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00594 657 ProSitePatterns Protein kinases ATP-binding region signature. 59 92 IPR017441 GO:0005524
Tsu03g00594 657 Gene3D Transferase(Phosphotransferase) domain 1 140 208 - -
Tsu03g00594 657 Gene3D Phosphorylase Kinase; domain 1 339 441 - -
Tsu03g00594 657 PANTHER OS01G0588500 PROTEIN-RELATED 212 313 - -
Tsu03g00594 657 PANTHER OS01G0588500 PROTEIN-RELATED 26 208 - -
Tsu03g00594 657 Pfam Protein tyrosine and serine/threonine kinase 210 306 IPR001245 GO:0004672|GO:0006468
Tsu03g00594 657 Pfam Protein tyrosine and serine/threonine kinase 56 208 IPR001245 GO:0004672|GO:0006468
Tsu03g00594 657 Pfam Protein tyrosine and serine/threonine kinase 358 641 IPR001245 GO:0004672|GO:0006468
Tsu03g00594 657 PANTHER OS01G0588500 PROTEIN-RELATED 329 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00594 Tsu-Chr3 5139417 5144314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00594 329 657 Glycoside Hydrolase AT3G07070 38.438 1.61e-68 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu03g00594 PK_Tyr_Ser-Thr 2.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00594 - - pvir:120693021 412.535