Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00581 atGAACATGCCTTCTTCTCCTCATGTTCTCCTACTTGTTTCTCCTCTAACAATTATCATTCTCATAATGTTCCTTCAAATCCAAATAAgcacttcttcttctctctcatctcCCCCACAAAAACCTTTCATATTACCTTTAAAAGTCCAAACACTCCCACATGGCACAATTTCACTTCCATCACCTTCTTCACATAAAATCTCTTTCCATCACAATGTAACATTAACAGTTTCACTAACACTTGGCTCACCCCCACAGAATGTTACCATGGTCCTTGACACAGGGAGTGAACTCTCATGGCTTCATTGTAAAAAGCTTCCAAATTTAACCTCCATTTTCAACCCACTTCTCTCTAAAACATACACTCCTATACCTTGTACTTCACCCGTTTGCATGACCCGAACCCGAGATTTTCCTGTACCCGTTTCATGTGACCCGAAAAAACTCTGCCATGCTACAATCTCATACGCCGATGCCTCCTACATCGAAGGAAACCTCGCCACTGAGACATTCTTCGCAGACGGGTCAGCACAACCCGGAACGATATTCGGGTGTATGGATTCTGGATTCAGCTCCAACACAAATGAAGACTCCAAAACAACCGGGTTAATGGGTATGAACCGTGGATCTCTCTCATTTGTGACCCAAATGGGTTTACCTAAATTCTCTTATTGCATCTCCGGCAAAGACTCCACCGGCGTTTTACTCTTTGGCGACGCAAATTTCAATTGGCTTGGACCATTGAAATACACTCCTCTAGTCAAAATGACAACCCCATTACCCTATTTCGATCGAGTCGCGTATACAGTTCGACTTGAGGGAATACGGGTCGGGAACAAGCTACTTGAATTACCCAAATCAATTCTCGCACCGGATCATACCGGTGCGGGTCAAACAATGGTTGATTCAGGTACCCAATTTACTTTTCTCTTAGGACCAGTTTACACCGCTTTGCGACAAGAATTTGTCTCTCAAACAAAAGGGGTGTTGACCCTTTTGAACGACACGAATTTCGTCTTCCAAGGAGCTATGGATTTATGCTACCGTATTTCGGGTTCAAATTCGGGTCGGGTGGGTCTTCCGACATTACCAGCAGTGACACTTATGTTTGAAGGAGCAGAAATGAGTGTTTCAGGAGAGAGATTATTGTATAGAGTTGTTGATGACGTGGCAACAAAAAAGTGGAACAATGATTTGGTATATTGTTTCACGTTTGGGAATTCTGACTTGTTGGGAATTGAGGCTTATGTTATTGGACATTATCATCAAATGAACGTGTGGATGGAGTTTGATTTGGTCAACTCTAGAGTTGGATTTGCTGATACTAGATGTGAACTAGCAAGTCAACGTTTAGGGATTTAG 1362 0.4185 MNMPSSPHVLLLVSPLTIIILIMFLQIQISTSSSLSSPPQKPFILPLKVQTLPHGTISLPSPSSHKISFHHNVTLTVSLTLGSPPQNVTMVLDTGSELSWLHCKKLPNLTSIFNPLLSKTYTPIPCTSPVCMTRTRDFPVPVSCDPKKLCHATISYADASYIEGNLATETFFADGSAQPGTIFGCMDSGFSSNTNEDSKTTGLMGMNRGSLSFVTQMGLPKFSYCISGKDSTGVLLFGDANFNWLGPLKYTPLVKMTTPLPYFDRVAYTVRLEGIRVGNKLLELPKSILAPDHTGAGQTMVDSGTQFTFLLGPVYTALRQEFVSQTKGVLTLLNDTNFVFQGAMDLCYRISGSNSGRVGLPTLPAVTLMFEGAEMSVSGERLLYRVVDDVATKKWNNDLVYCFTFGNSDLLGIEAYVIGHYHQMNVWMEFDLVNSRVGFADTRCELASQRLGI 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00581 453 CDD pepsin_A_like_plant 74 444 IPR034161 -
Tsu03g00581 453 Gene3D Acid Proteases 66 238 IPR021109 -
Tsu03g00581 453 ProSiteProfiles Peptidase family A1 domain profile. 75 440 IPR033121 -
Tsu03g00581 453 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 90 101 IPR001969 GO:0004190|GO:0006508
Tsu03g00581 453 SUPERFAMILY Acid proteases 76 444 IPR021109 -
Tsu03g00581 453 Pfam Xylanase inhibitor C-terminal 267 440 IPR032799 -
Tsu03g00581 453 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 18 452 - -
Tsu03g00581 453 Pfam Xylanase inhibitor N-terminal 76 239 IPR032861 -
Tsu03g00581 453 PANTHER ASPARTYL PROTEASE-RELATED 18 452 IPR001461 GO:0004190|GO:0006508
Tsu03g00581 453 Gene3D Acid Proteases 245 449 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00581 Tsu-Chr3 4981443 4983017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00581 61 254 Miscellaneous Gene Families AT1G44130 31.604 2.19e-15 75.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00581 03 4981443 4983017 Tsu05g03227 05 43512954 43514141 ECH
Tsu03g00581 03 4981443 4983017 Tsu03g00581 03 4981443 4983017 ECH