Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00580 atgtcgACGGAGACGACGTCGTATTGGTGTTATAGATGCAGTCGTTTTGTAAGATTAGCGACACAAGAAACGGTTATTTGTCCCGATTGTGACGGTGGTTTTCTTGAACAAATTGAACAACCGTCACGTTCTCTTCAAATTGATTCCCGCCGAAGACGTTTTCCGGCTGCTGCTATGTACATGATCGGTCAACGTCCTAGTTCCGATCATACTTTCCGACCATCTTCTATCAGAAGAAGTCGTCGTAACGGTGGTGAACGGTCTCCTTTCAATCCGGTTATTGTTCTCCGTGGTGGTGGAACAACGGCAGAGGTTACAGAAGGTGGAGGAGAGAGTGGTGGATTTGAGCTTTTCTATGATGATGGTGCTGGTTCTGGTTTAAGACCTTTACCACCAAGTATGTCTGAGTTTCTTCTTGGATCTGGATTTGATAGATTGTTAGAACAGCTTTCTCAGATTGAGATTAATGGAATTTCGAGATTCGAACATCCACCGGCTTCTAAAGCTGCAGTTGATTCATTACCGACGATTGAAATTGATAATACTCATTTGGAAATGGAACCACACTGTGCTGTTTGTATGGAAGCTTTTGAATTTGGTACTGTTGTTAGAGAAATGCCTTGTAAGCATATTTATCATCCTGATTGTATTTTACCTTGGCTTGCACTTCATAATTCGTGCCCGGTTTGTCGCCATGAATTACCGTCTGATAATTCTGATGGTGTGGTGgctaataacaataataatcagCCACAATTACAGACGCAGTCGCAATCGGTTGGTTTGAATGAAGAAGAGAGTAATGTTGGGTTGACTATTTGGAGATTACCGGGTGGTGGTTTTGCTGTGGGAAGATTTTCGGGTGGGAGAAGAGGTGCTGAAAGAGAGCTTCCTGTTGTTTATACTGAAATGGATGGAGGGTTTAATAATGGTGGTGAACCTAGGAGGATTTCTTGGTCTTCTAGAGGGGGTAGAGGGAGAGAGAGACGTGGCGGTTTGAGAAGGTTTTTAGGGAGTTTCTTTGGTTGTTTTAGTAGTAGTGGAGTTGGGAATCAACAGCGTACGGTTTCGAGTAGAGAGTTGCGACCAGTGAGGACTAATTCGTCTCATTCTTCAAATACGGATCCCTCTCCGCGTTCGCGAAGGACTTGGTCTATGGATGTAAATAGTGGAATGAGATCATGGATTGGGAATTGTGATTGTATGGTTCATCAATGGGGATGTGAAGCAGCAGCAATGGCAGAAAAATCGGAAAACAATCGGGGGGGGGGGAACCTTAGTAGAACGATGATAACCTGTGCGGTTTCGTCGTTGATGGAAGTTGTATTTGTGGATGGAAACATCGTGTCGGAGATATCGAATTGTGGTTACAGCAAGACAGTGAGGGTGGATAGAGAAGCAAGGGTGTTGACGAATAAGGAGAAGAGAAATAATCGAAGGTTCGAGAAGATGATTCACGATTCGTTATGCTTCCAATTCCCTCATTCTCATTGCAACGAGGATCCACCAAGCACTACCACGTCAGTTCTGGCAAGGTTCGTTCTCGATGCTATTCACAGACATTTTGATAATACTGATGAATTATGGTTACAATTTATGTCGTCTCACCCTACTGAATTGAAGTTGTCAAAAGCTTCTGAGCCACTAACTTTGTCTATCAGCGTCGCCATTATCAAGTTGTTCAGATGGAGTATGATATGCCTAGTTGGCCATCCTGGTCCTCTTTGA 1728 0.4311 MSTETTSYWCYRCSRFVRLATQETVICPDCDGGFLEQIEQPSRSLQIDSRRRRFPAAAMYMIGQRPSSDHTFRPSSIRRSRRNGGERSPFNPVIVLRGGGTTAEVTEGGGESGGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGISRFEHPPASKAAVDSLPTIEIDNTHLEMEPHCAVCMEAFEFGTVVREMPCKHIYHPDCILPWLALHNSCPVCRHELPSDNSDGVVANNNNNQPQLQTQSQSVGLNEEESNVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGGRGRERRGGLRRFLGSFFGCFSSSGVGNQQRTVSSRELRPVRTNSSHSSNTDPSPRSRRTWSMDVNSGMRSWIGNCDCMVHQWGCEAAAMAEKSENNRGGGNLSRTMITCAVSSLMEVVFVDGNIVSEISNCGYSKTVRVDREARVLTNKEKRNNRRFEKMIHDSLCFQFPHSHCNEDPPSTTTSVLARFVLDAIHRHFDNTDELWLQFMSSHPTELKLSKASEPLTLSISVAIIKLFRWSMICLVGHPGPL 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00580 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 237 IPR013083 -
Tsu03g00580 575 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 342 - -
Tsu03g00580 575 Pfam Protein of unknown function (DUF1117) 269 370 IPR010543 -
Tsu03g00580 575 MobiDBLite consensus disorder prediction 65 111 - -
Tsu03g00580 575 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Tsu03g00580 575 MobiDBLite consensus disorder prediction 348 385 - -
Tsu03g00580 575 SMART ring_2 190 230 IPR001841 -
Tsu03g00580 575 SUPERFAMILY RING/U-box 170 237 - -
Tsu03g00580 575 Pfam zinc-ribbon 6 38 IPR039525 GO:0061630
Tsu03g00580 575 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 342 - -
Tsu03g00580 575 CDD RING-H2_RNF126_like 190 231 - -
Tsu03g00580 575 Pfam Ring finger domain 189 231 IPR001841 -
Tsu03g00580 575 MobiDBLite consensus disorder prediction 241 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00580 Tsu-Chr3 4964339 4973182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00580 129 240 C3H Transcription Factor Family AT5G01980 41.964 9.32e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00580 - K11982 gmx:100807324 536.569