Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00579 ATGGCACAACCTTCGTTAACAAGAGAAGGATTCTCTCCCATTCCTGATGTTAGATGGGAAGACGTTGGTGCGCTTGATCATGTAAGAGAGGAGTTTGATCAACACATTGTAAAGCGCATAAAAAACCCCGACGTTTATGAGGGACTTGGGTTGGATCGTGATACGGGATTTTTGCTTTATGGGCCTCCAGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAGGCGGGGGCtaatttcatttatattaaGGGTCCTGAGCTTCTGAATAAATTTGTTGGAGAAAGCGAACGTGAAGTTCGGAAATTATTTTATCGTGCAAGGGCATGTGCACCATGTATACTTTTTTTTGACGAGATTTGTAGTTCTCTCTTAACAAAAATGCAAGTGGATGCTTTGACAACAACAGAACATGGAAATGAAGGTGGGCGGGTTATTGACGGAATAAGGAAACAGTTGCAGATTGAGTTAGATGGCGCAGAGCAACGCAGAGGTGTTTTCGTGATTGGTGCAACAAATAGGCCTGAGGTGATCGACAGTGCTCTCCTACGTCCGGGTAGATTTGGCAATCATACTTATATTCCTGTTCCAAGCCCAGACGGCCGTGTCTCGATATTGAAAGCTCTTTCAATGCATAAGGAAGCTCTTGCAAGGCGTATGGAAAATCGTGCAAGGTTTAAGCTTATGCCTATTGATACCAGTGTGGATTTGAGCTCCATTGCAAGATTGAAAGCTTGTGAAAACTTTAGTGGTGCTGATCTTGCTGCATTGATGGACAAAGCAATATTGGCTGCTCTCGAAGAGAAGCTGACCACAACGGAGAAAAAAAGTGATACATTGACCGTCGAGTCAAAGCATTTTGAGGTCGCGCTAAGCAAAGTCTCTCCCTCTGTATCAGAAAAGCAAATGGAATACTATGAGCATATTTCGAAGCTCCTTAAAGCGACTTGA 957 0.4326 MAQPSLTREGFSPIPDVRWEDVGALDHVREEFDQHIVKRIKNPDVYEGLGLDRDTGFLLYGPPGCGKTLIAKAVANEAGANFIYIKGPELLNKFVGESEREVRKLFYRARACAPCILFFDEICSSLLTKMQVDALTTTEHGNEGGRVIDGIRKQLQIELDGAEQRRGVFVIGATNRPEVIDSALLRPGRFGNHTYIPVPSPDGRVSILKALSMHKEALARRMENRARFKLMPIDTSVDLSSIARLKACENFSGADLAALMDKAILAALEEKLTTTEKKSDTLTVESKHFEVALSKVSPSVSEKQMEYYEHISKLLKAT 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00579 318 Gene3D - 15 309 IPR027417 -
Tsu03g00579 318 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 2 312 - -
Tsu03g00579 318 ProSitePatterns AAA-protein family signature. 168 186 IPR003960 GO:0005524|GO:0016887
Tsu03g00579 318 Pfam ATPase family associated with various cellular activities (AAA) 58 197 IPR003959 GO:0005524|GO:0016887
Tsu03g00579 318 Pfam AAA+ lid domain 236 290 IPR041569 -
Tsu03g00579 318 Coils Coil 265 285 - -
Tsu03g00579 318 CDD AAA 56 197 - -
Tsu03g00579 318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 315 IPR027417 -
Tsu03g00579 318 SMART AAA_5 53 200 IPR003593 -
Tsu03g00579 318 Gene3D - 199 294 - -
Tsu03g00579 318 PANTHER AAA-FAMILY ATPASE 2 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00579 Tsu-Chr3 4946262 4948235 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00579 3 299 Calmodulin-binding Proteins AT3G56690 39.597 2.58e-60 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00579 K14571 - gmx:100809594 384.415