Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00578 ATGGGAAGAAGGTTACAACAAACCCTTCTCCCTCGTATCGATTCATGCAAATCTAAATTCTCAACCGCCGATGAAATCGTCCGCCATCTCCGTTCAACTTACCCCGATTACCATCGAATCAAGTCTCAAACACTCCTTTACTATGTTAACATTGCTCTTCTTTCTTCTAATAACAAACCCGCCGGAGAAGTCGATCAGGCTGCTTCTCAATTAACGAAACTTTCGCTTTCGGAAAACAACGGCGGTGACAGTGGCGACGGTGATGTTAAAAATGTTAAGAATGTTCCGAAGACGCCGATGTTTAAGGATTTAGGTGGAAATGGAATGGAGAAGATAAAGAATGAATTGGAAGCACCTCTTATGTTAGTATGTCAACCTAAGCTGTGTAGAGAGTTTGGATTGAAACCAATTACTGGAATTTTGTTGCATGGTCCGCCTGGTTGTGGAAAGACTAGACTTGCTCATGCTATTGCTAATGAGTCTGAGCTTCCATTTTATCCTATTTCTGCTACTCGTGTTGTTACTGGAGTTGCTGGCGAAtctgaaaaaaatattagagaGCTTTTCTCTAAAGCCAAAAAGACTGCTCCATCAATTATCTTTATTGATGCAATTGCTATGAGAGGAGATAATGCACAGCGACAGATGGAGACACGAATTGTGACACAGTTATTAACTTGCATGGATGAAGCTTGTAGTAGTTCAGGGAGTTCTGATGAACCTACTGGTTATGTTCTTGTAATTGGAGCCACAAATAGGCTCGATGCTATTGACTCTGCTTTGAGAAGGCCTGGTCGCTTTGCTCTTGAGATTGATGTTGGCATTCCCGATGAATCTGCCAGGGAGGCGATACTTTTCTTGCATACTCGAAATTGCAGTGACAAGCTCGACAGTTCGGTTGATCTGCAAAAATAG 915 0.4164 MGRRLQQTLLPRIDSCKSKFSTADEIVRHLRSTYPDYHRIKSQTLLYYVNIALLSSNNKPAGEVDQAASQLTKLSLSENNGGDSGDGDVKNVKNVPKTPMFKDLGGNGMEKIKNELEAPLMLVCQPKLCREFGLKPITGILLHGPPGCGKTRLAHAIANESELPFYPISATRVVTGVAGESEKNIRELFSKAKKTAPSIIFIDAIAMRGDNAQRQMETRIVTQLLTCMDEACSSSGSSDEPTGYVLVIGATNRLDAIDSALRRPGRFALEIDVGIPDESAREAILFLHTRNCSDKLDSSVDLQK 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00578 304 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 16 304 - -
Tsu03g00578 304 MobiDBLite consensus disorder prediction 76 97 - -
Tsu03g00578 304 ProSitePatterns AAA-protein family signature. 245 263 IPR003960 GO:0005524|GO:0016887
Tsu03g00578 304 PANTHER AAA-FAMILY ATPASE 16 304 - -
Tsu03g00578 304 SMART AAA_5 136 277 IPR003593 -
Tsu03g00578 304 Gene3D - 108 275 IPR027417 -
Tsu03g00578 304 CDD AAA 139 274 - -
Tsu03g00578 304 Pfam ATPase family associated with various cellular activities (AAA) 140 273 IPR003959 GO:0005524|GO:0016887
Tsu03g00578 304 Gene3D - 276 303 - -
Tsu03g00578 304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 293 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00578 Tsu-Chr3 4943590 4945859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00578 92 296 Calmodulin-binding Proteins AT3G56690 40.845 9.93e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00578 K14571 - zju:107431316 242.276