Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00577 ATGGCAAGTGTAAAAGAAACCCTTCTCCGACACGTTAAATCATGCAAATCAACTTTGTCGATCTCAAACGCCATTGATATCGTCGACCATCTCCGTTCAAATTACTCCGATTACAACCAATACCGTTATATGAGACTCTTATACTCTGTTCAAAATGCTCTTGATTCTTTAAAAACCGACAACAAAGCCGCCGGCCTAGGgaagaaagaaatcaaagcAGCTGTTACTAATCATCACATAAGTGAAACTAATGTCGTAAGGTGGAAGAAACCTTGGTTGCCTCAAGAAATAAATAGATTTGCAGCAAAAATGGCAGACGGTGGACTCTCTCCCATTCCTGATGTTAAATGGGAAGACGTTGGTGCCCTTGATCATGTAAGAGAAGAATTTGATCAACACATTGTAAATCGCGTAAAAAACCCCGACGTTTATGAGGGACTTGGGTTGGATCTTGATATAGGGTTTTTGCTTTATGGGCCTCCAGGTTGTGGTAAAACACTTATCGCCAAAGCTGTTGCCAATGAGGCGGGAGCtaatttcatttatattaaGGGCCCCGAGCTTCTAAGAAAAGATGTTGGAGAAAGCGAGAGTGGAGTCCGGAAATTATTTGATCATGCAAGGGCATGTGCACCATACCATGGTGATGAAAGTGTACGGAAACAGTTGCAGAATGAGTTAGATGGCGCAGAGCAACGCAGAGGTGTTTTCGTGATTGGTGCAACAAATAGGCCTGAGGAGATCGACAGTGCTCTCCTACGTCCGGGTAGATTTGGTAATCATATTTATATTCCTGTTCCAAGCCCAGACGGTCGTGTCTCGATATTGAAAGCTCTTGCAAGGCGTATGGAAAATCTTCCAAGGTTTAGGCTTATGCCTATTGATGCCAGTGTGAATTTGAGCTCCATTGCAAGATCGAAAGCTTGTACAAACTTTAGTGGTGCTGATCTTGCGGCATTGATGGACAAAGCAATATTGGTTGCACTCGAAGAGAAGCTGGCCACAACGGAGAACAAAAGTGATACATTGACCGTCGAGTCAAGGCATTTTGAGGTTGCGCTGAGCAAAGTCTCTCCCTCTGTGTCGAAAAAGCAAAGGGAGAACTATGAGAAAATTTCGAAGCTCCTTAAAGCGGCATGA 1140 0.4281 MASVKETLLRHVKSCKSTLSISNAIDIVDHLRSNYSDYNQYRYMRLLYSVQNALDSLKTDNKAAGLGKKEIKAAVTNHHISETNVVRWKKPWLPQEINRFAAKMADGGLSPIPDVKWEDVGALDHVREEFDQHIVNRVKNPDVYEGLGLDLDIGFLLYGPPGCGKTLIAKAVANEAGANFIYIKGPELLRKDVGESESGVRKLFDHARACAPYHGDESVRKQLQNELDGAEQRRGVFVIGATNRPEEIDSALLRPGRFGNHIYIPVPSPDGRVSILKALARRMENLPRFRLMPIDASVNLSSIARSKACTNFSGADLAALMDKAILVALEEKLATTENKSDTLTVESRHFEVALSKVSPSVSKKQRENYEKISKLLKAA 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00577 379 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 104 374 - -
Tsu03g00577 379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 376 IPR027417 -
Tsu03g00577 379 Gene3D - 214 267 IPR027417 -
Tsu03g00577 379 ProSitePatterns AAA-protein family signature. 236 254 IPR003960 GO:0005524|GO:0016887
Tsu03g00577 379 Pfam AAA+ lid domain 297 351 IPR041569 -
Tsu03g00577 379 PANTHER AAA-FAMILY ATPASE 104 374 - -
Tsu03g00577 379 Pfam ATPase family associated with various cellular activities (AAA) 156 265 IPR003959 GO:0005524|GO:0016887
Tsu03g00577 379 Coils Coil 326 346 - -
Tsu03g00577 379 Gene3D - 268 367 - -
Tsu03g00577 379 Coils Coil 213 233 - -
Tsu03g00577 379 Gene3D - 113 212 IPR027417 -
Tsu03g00577 379 SMART AAA_5 151 268 IPR003593 -
Tsu03g00577 379 CDD AAA 154 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00577 Tsu-Chr3 4940145 4942327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00577 112 376 Calmodulin-binding Proteins AT3G56690 37.762 7.20e-49 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00577 K14571 - gmx:100809594 332.798