Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00563 ATGGCAGTTCAAAGCTCCACTTCCACTAAACCACAACCTCCCAACAACGTTTCTCACGACCATTTCTTTGTATGGAGGGAGTTTGTATGGGGAGCTGTTGCGGGTGCTTTTGGGGAAGGAATGATGCATCCGGTAGATACCATCAAAACTCGAATACAAAGTCAAGCTATTTTAAATGGTGTTAAGAACCAGAAAGGCATATTGCAGATGGTGCGGTCTGTCTGGAAGGTTGACGGATTAAGAGgCTTTTACAGGGGTGTAATACCTGGTGTTACTGGGTCTCTTGCGACTGGTGCAACGTATTTTGGTGTCATTGAGTCCACTAAAAAGTGGATTGAGGAATCACATCCTAGCCTTGGGGGTCATTGGGCACATTTCATTGCTGGAGCTGTTGGAGATACACTTGGTTCTGTAGTATATGTTCCATGCGAAGTGATAAAGCAACGCATGCAAGTTCAAGGCACAATTACATCATGGAGTTCTACTGCAATGAAGAATGGTATTGCAGTAAATCCTGGTGCAGAAATATATGACTATTATAAAGGGATGTTCCATGCAGGCTGCTCAATATGGAGAACACAGGGCTTCAAGGGTTTATATGCAGGATATTTGTCTACACTGGCAAGGGATGTACCATTTGCTGGCCTGATGGTTGTGTTCTATGAAGCTTTGAAAGATGTTACAGAGTATGGGAAGCAAAGATGGGTATCTGACCCAAAATGGCATGTTAATAATTCATTTGAGGGACTGGTTTTAGGAGGATTAGCTGGTGGTCTCAGTGCATATCTCACCACTCCTTTGGATGTCGTCAAAACTAGGCTTCAAGTTCAGGGTTCAACTTTTAGGTATAATGGTTGGTTGGATGCAATCTACAATATATGGGCTAAGGAAGGCATGAATGGGATGTTTAGGGGTAGCATTCCCAGAATTGCGTGGTACATTCCGGCTTCAGCACTTACATTCATGGCCGTGGAATTTCTCAGAGAAAATTTTAATGTAAGAGCACCTAATGGTGATTTGAGAGATGTTGCCAGATTATCAGTAGAAAAGAAGAAATCTCTGCAGGAGGCTACTTAA 1077 0.429 MAVQSSTSTKPQPPNNVSHDHFFVWREFVWGAVAGAFGEGMMHPVDTIKTRIQSQAILNGVKNQKGILQMVRSVWKVDGLRGFYRGVIPGVTGSLATGATYFGVIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSVVYVPCEVIKQRMQVQGTITSWSSTAMKNGIAVNPGAEIYDYYKGMFHAGCSIWRTQGFKGLYAGYLSTLARDVPFAGLMVVFYEALKDVTEYGKQRWVSDPKWHVNNSFEGLVLGGLAGGLSAYLTTPLDVVKTRLQVQGSTFRYNGWLDAIYNIWAKEGMNGMFRGSIPRIAWYIPASALTFMAVEFLRENFNVRAPNGDLRDVARLSVEKKKSLQEAT 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00563 358 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 1 355 - -
Tsu03g00563 358 ProSiteProfiles Solute carrier (Solcar) repeat profile. 22 111 IPR018108 -
Tsu03g00563 358 SUPERFAMILY Mitochondrial carrier 21 327 IPR023395 -
Tsu03g00563 358 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 330 IPR018108 -
Tsu03g00563 358 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 355 - -
Tsu03g00563 358 Gene3D Mitochondrial carrier domain 3 170 IPR023395 -
Tsu03g00563 358 Gene3D Mitochondrial carrier domain 171 343 IPR023395 -
Tsu03g00563 358 Pfam Mitochondrial carrier protein 122 227 IPR018108 -
Tsu03g00563 358 Pfam Mitochondrial carrier protein 23 114 IPR018108 -
Tsu03g00563 358 Pfam Mitochondrial carrier protein 246 332 IPR018108 -
Tsu03g00563 358 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 227 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00563 Tsu-Chr3 4778771 4783599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00563 1 333 Chloroplast and Mitochondria Gene Families AT1G07030 29.379 2.84e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00563 - - gmx:100790921 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00563 03 4778771 4783599 Tsu03g00563 03 4778771 4783599 ECH