Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00558 ATGGTTGCTGCAGCTCAACACATTCTAAAAGCACTAGCTTCAAGCAAAACTGTTTCTCATGAGTTGAGAAAAACTCTCTTGGATCTTGAGATTCAATTGTCTACAATCAATGAAAGAAAAGGAAGTGGAATTAAGCAATTAGAGAGAAAGCTTAAATGTCTTGAAGATAAGGTTGTTATGTTAAGACTTGAGGAAGATTTGGTTCAAATTCTTGTTAATCATAAGCAATATTTTGAGCCTGATTACATGTCTTTCAATTCCAATAGAGTGGATTTGGTGTATGATGAATCATTTGGTTCGGTTGAGGATGAACCAATCAACAAGGTGTCGCGGAGTATTGATGATGATAGCTTATCCGAGGCGAGTAATATAGATTTGGTGAATCCTTCTGTACTTGAAGATCTTAAAAGCATTGCTAAAGCCATGTTTGGTTCAAATTACCATCATGAGTTTTGTCATGTTTTCATTTCTTCTAGGAGAGAAGCTTTGGATGAgtactttgtcattttagaaATCGAAAAATTAAGCATCGAAAATATGCTAAAAATGGAATGGCAAGGTTTGAAttgcatgataaaaaaatggatACGAGCGATGAAGTTCATTGTTCAAGCGTATCTTGTTGGCGAGAAACGATTGTGTAAGCAAATTCTCGGTGACTTTGGATCGGTTTATCAGTATTGCTTCTCCGAAATATCTCGGAGTTCGGTTTTGCACCTTTTAAATTTTGGTGAGGCCATAGCAATGGGAACACATGCACCAGAGAAACTGTTCTGTTTACTTAACATGTATGAGGCATTAGAACATGTTGCAGTGGATATAGATTTTTTGTTCATTGAAGAAATCGATTCTTTCGTTCGAAGAGAGTTTCATAAGCTTCAAAGAATCATTGTTGAAACTATAAAATCCACATTTCTTTCATTTAGAAATGCTATTGCAACAGATCcatcaaaaaaatgttttcctTGTGGAGGTGTTCATCCTCTTACAAAATATGTCATGAATTACATCAATGCACTTGTTGAATATGGTGATAGCCTTAATCTTCTTGTCGATGAAAGTTCGACCGATTCGACAGATAGCAATGATGAATTAACATGTTCTCCATTGGCTTGCAACTTAAGGTTAATCACTACAACTCTAGAATCAAACTTGTGTAACAAATCCAAGTTATACAATGATGTGGCTTTGCAACATATTTTCATGATGAATAATATCCATTACATGGTGAAAAAGGTTAAGTCTACTAAACTAAGTAATTTCTTCGGAGATTGCTGGCTTCGTCGACATGTTGGAATGTTTCAACATTATGCTCGAAGCTACGAGAAGGTGAGTTGGAGTTCAGTACTTTCTTTGTTTAGTGACGAAAGTTTGTCGAATAGTGTCGCggagagaaaaataaagaaaaaatgcaaagaTTTTAGTGCTGCTTTTGGTGAAGTATACAAAACACAAACAGGTTGGAGTGTACCGGATAAAGAACTTCGCGAAGATTTACAGATATCCGTTTCTCAGAAAGTGATTCCTGCTTATCGAAGTTATACCGGTAGACATTCGTCTAAAATTGATGACAAGTGGACCAAaagagaaacaaagcGAAATAGTGAGTGTTCAACCAAGAACAAATCAAAGGTTAGAGGGATGGCTTTCTTTGGTAGAGTTGGGAATTTATTAAGGACTGCAGCGAATACGAAGATCAGTTCCGAGGTTAAGTTGCGCTCTGTCCCATCTGTTTTCCAAGCCATACGGTGCTTTTCGGGTCCTCCGTCTACTCCGTCTTCAAAGCTGTTTGTGGGAGGTGTTTCCTATTCTACTGATGAACAAAGTTTGAGGGaagttttttcaaaatatgGCGAAGTTGCTGATGTGAGGATTATTATGGATCGCGAAACTGGTAGGTCCAAAGGATATGGCTTCGTTACTTACAATACAGTCGAAGAGGCATCAAGTGCCATTCAAGCCTTGGATGGACAGgAATTGCATGGTCGCCGGGTTGGTGTAAATTTTGCCAATGAAAGACCCCGTGGatttggtggtggtggtggtggcttTGATGGATCTTATGGAAACAATTCCTATGGcggtggaggtggtggtggaTATTCAAGTGGTTACGGTAACTCTACATACAATGCTCCTTCAAGCGGTGGTGGGTATGGTGGTAATGTCTCTGGAGGTTATGGCGGAGGTGGTTACGGAAGCACTGACAATGATGGAGGTTATGGTGGCAACAATGTGAATTATGGTGCTCCTGTGGGCGGTGGTGAAAGCAATACTGTTAACTATAGTAGTCCTCCTGGTGTTGGTGGTTATGGTGGAAACAACACAAATTATGGTGCTCCTGTGGGTGGTAGTGAAAGCAATAATGTTAACTATGGCAGTGCTCCTGCTGTTGGTGGTTATGGTAGTAACAATGCGACTTATGGTGCTGCTGATACTGTTAACTATGGCAGTGCTCCTGCTGTTGGTGGTTATGGTAGTAACAATGCGACTTATGGTGCTGCTGATACTGTTAACTATGGTAGTGCTCCTGGTGTTGGCGGTTATGGTTCTGCCATAGGTGGTGGTGGTCCTGGTGTTGGTGGTTATGGCAGTGGTAACAATGCGACTTATGGTGCTGCTGTAGGTGGTGGTGAAAGCAATTCTTTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGCGGTGGTAACAATGCAAATTATGGTGCTGCTGTGGGTGGTGGAGATAGCAATCCTGTTAACTATGGTACTGCTCCTGCTGATGGTGGTTATGGTGCTGCTGCTGGATTTGGCAATAGTACTCCTGGTAGTGGAGGATTTGGATACGGTGAAAGTGGTCGAGAAAATTTCAGGAGTGATGATCATGAAGTTGATGCTTTTGCTAAACGGGGTTGA 2898 0.3847 MVAAAQHILKALASSKTVSHELRKTLLDLEIQLSTINERKGSGIKQLERKLKCLEDKVVMLRLEEDLVQILVNHKQYFEPDYMSFNSNRVDLVYDESFGSVEDEPINKVSRSIDDDSLSEASNIDLVNPSVLEDLKSIAKAMFGSNYHHEFCHVFISSRREALDEYFVILEIEKLSIENMLKMEWQGLNCMIKKWIRAMKFIVQAYLVGEKRLCKQILGDFGSVYQYCFSEISRSSVLHLLNFGEAIAMGTHAPEKLFCLLNMYEALEHVAVDIDFLFIEEIDSFVRREFHKLQRIIVETIKSTFLSFRNAIATDPSKKCFPCGGVHPLTKYVMNYINALVEYGDSLNLLVDESSTDSTDSNDELTCSPLACNLRLITTTLESNLCNKSKLYNDVALQHIFMMNNIHYMVKKVKSTKLSNFFGDCWLRRHVGMFQHYARSYEKVSWSSVLSLFSDESLSNSVAERKIKKKCKDFSAAFGEVYKTQTGWSVPDKELREDLQISVSQKVIPAYRSYTGRHSSKIDDKWTKRETKRNSECSTKNKSKVRGMAFFGRVGNLLRTAANTKISSEVKLRSVPSVFQAIRCFSGPPSTPSSKLFVGGVSYSTDEQSLREVFSKYGEVADVRIIMDRETGRSKGYGFVTYNTVEEASSAIQALDGQELHGRRVGVNFANERPRGFGGGGGGFDGSYGNNSYGGGGGGGYSSGYGNSTYNAPSSGGGYGGNVSGGYGGGGYGSTDNDGGYGGNNVNYGAPVGGGESNTVNYSSPPGVGGYGGNNTNYGAPVGGSESNNVNYGSAPAVGGYGSNNATYGAADTVNYGSAPAVGGYGSNNATYGAADTVNYGSAPGVGGYGSAIGGGGPGVGGYGSGNNATYGAAVGGGESNSFNYGSAPGVGGYGGGNNANYGAAVGGGDSNPVNYGTAPADGGYGAAAGFGNSTPGSGGFGYGESGRENFRSDDHEVDAFAKRG 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00558 965 PANTHER EXOCYST COMPLEX PROTEIN EXO70 11 59 IPR004140 GO:0000145|GO:0006887
Tsu03g00558 965 Gene3D Exocyst complex component Exo70 42 533 - -
Tsu03g00558 965 MobiDBLite consensus disorder prediction 937 965 - -
Tsu03g00558 965 PANTHER EXOCYST COMPLEX COMPONENT EXO70E2 58 530 - -
Tsu03g00558 965 PANTHER EXOCYST COMPLEX COMPONENT EXO70E2 11 59 - -
Tsu03g00558 965 CDD RRM_HP0827_like 595 671 - -
Tsu03g00558 965 SUPERFAMILY Cullin repeat-like 59 528 IPR016159 -
Tsu03g00558 965 Gene3D - 586 711 IPR012677 -
Tsu03g00558 965 PANTHER EXOCYST COMPLEX PROTEIN EXO70 58 530 IPR004140 GO:0000145|GO:0006887
Tsu03g00558 965 MobiDBLite consensus disorder prediction 948 965 - -
Tsu03g00558 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 596 665 IPR000504 GO:0003723
Tsu03g00558 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 594 672 IPR000504 GO:0003723
Tsu03g00558 965 Pfam Exo70 exocyst complex subunit 193 522 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tsu03g00558 965 SUPERFAMILY RNA-binding domain, RBD 588 702 IPR035979 GO:0003676
Tsu03g00558 965 SMART rrm1_1 595 668 IPR000504 GO:0003723
Tsu03g00558 965 Coils Coil 37 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00558 Tsu-Chr3 4733203 4741952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00558 58 525 EXO70 exocyst subunit family AT5G61010 47.368 2.07e-144 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00558 K07195 - gmx:100791622 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00558 03 4733203 4741952 Tsu03g00558 03 4733203 4741952 ECH