Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00554 ATGATGTCAAGTTCAAGAGATGGCAATTATCAAGCAAAACAAGGAGATGACAATGAAATGACTACtattgaaaaaatttcaaagatacCTTCAAGTAGTTCAAGACAATGGTCAACATCAAGTTTAAGAAATCCAAGAATTGTGAGAGTATCAAGAACATTTGGAGGCAAAGATAGACATAGCAAAGTTTGCACAATAAGAGGATTAAGAGATAGAAGGATTAGGCTTTCAGTTCCAACAGCAATTCAATTATATGATCTTCAAGATAAACTTGGTTTAGGACAACCAAGTAAAGTTATTGATTGGTTACTTGAAGCAACAAAATGTGACATTGATAAACTTCCACCACTTCAATTTCCTCAAAGCTTTTCACaatttcatcatcttcatccacAAACCCTACTTCCTTTTCATGATCAATCAAGTAATGTCTTATCTCATGAACTTTCTCTTGGTCCTAATTTGTATGATCCTAATTCCACATTTGTTGGAATTCAAAATCTTATGGCAAGGTCAAAATTTTGGGATATGGATTCAAGGATTAATAAAGGTAAAGAAGTTGAAAGAGAGTACTTTGGTGATAAAGGTAAGTGGATTAAAACTAATGATGATGAAAATCATCAAGGTGGAGAAGCTAGTTACAATAATTTTCATCAAGTTTCAACTCAAAAGCTTTTCCCTATGGAGACTCACTCTAATTTTCTAAACAATGCTATGCCATCATATAACAATTATCATTCAGAAGCTTCTAATTTGTCTTTATCTCAATTTGGAACTAGTCATGGAATGTTCCAATCTCATCAACAAGTAGATCCTAATCAAAGTAGTGGAAATAATGCTTTGCAATTTCCATTTTCTTTACCAAATTCACAATTATTTTTTGgtccttcttcatcttctactACACCATTGAATCCTTTTATGAACAATCCAGTTGAAAATGATCCAAGGATACAATTCAATCATTTTCAGTTCATGAACTCAAGTTCTTCTTCTCAAGCTTTGCCTCATCCTCTCATTCCATCTTTTCATCACTCATACAATTCAACTCCAATTCGACCTTTTCCATTACCATTTAGCTCCAAACTTCTAGATTCGGATAACAATAACAACGGTAACCAACCGGATAATAAGGGTAGTCGTGATCGTTCTTGA 1155 0.3169 MMSSSRDGNYQAKQGDDNEMTTIEKISKIPSSSSRQWSTSSLRNPRIVRVSRTFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKCDIDKLPPLQFPQSFSQFHHLHPQTLLPFHDQSSNVLSHELSLGPNLYDPNSTFVGIQNLMARSKFWDMDSRINKGKEVEREYFGDKGKWIKTNDDENHQGGEASYNNFHQVSTQKLFPMETHSNFLNNAMPSYNNYHSEASNLSLSQFGTSHGMFQSHQQVDPNQSSGNNALQFPFSLPNSQLFFGPSSSSTTPLNPFMNNPVENDPRIQFNHFQFMNSSSSSQALPHPLIPSFHHSYNSTPIRPFPLPFSSKLLDSDNNNNGNQPDNKGSRDRS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00554 384 MobiDBLite consensus disorder prediction 1 40 - -
Tsu03g00554 384 PANTHER TRANSCRIPTION FACTOR TCP17 1 378 - -
Tsu03g00554 384 MobiDBLite consensus disorder prediction 24 40 - -
Tsu03g00554 384 MobiDBLite consensus disorder prediction 1 17 - -
Tsu03g00554 384 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 378 IPR005333 GO:0003700
Tsu03g00554 384 ProSiteProfiles TCP domain profile. 56 114 IPR017887 -
Tsu03g00554 384 Pfam TCP family transcription factor 56 125 IPR017887 -
Tsu03g00554 384 MobiDBLite consensus disorder prediction 358 384 - -
Tsu03g00554 384 MobiDBLite consensus disorder prediction 362 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00554 Tsu-Chr3 4702291 4704585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00554 39 376 TCP Transcription Factor Family AT5G60970 38.965 1.38e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Tsu03g00554 TCP 8.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00554 - - cam:101498052 526.554