LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g00548	aTGTGGAAATTTAAGCCGTTCATGCACAAAGAGCAAAATGGTCTCGAAGGCCGTTCTATAGATGTTGGAAATCTTAAAATAAATGTCCATAAGGTCATCGCTGAAGGTGGGTTCTCATGTGTCTACTTGGCTCGTGATGCTGTACATATGTCTAAACAGTATGCTTTGAAGCACATAATATGCAATGATGAAGAATCACTTGGATTGGTGAAGAGGGAGATATCTGTGATGAAGTTGCTGATAGGACATCCCAATGTTGTCAAACTTCATGCTCATGCCATCTATGATATGGGTAGGACAAAAGAGGCATTCCTTGTGATGGAATTTTGTGAGAAGTCTCTGGTTAGTGTGCTGGAGAGCCGAGGAGCTGGTTATTTTGATGAGAAACAAGTTCTTTTAATCTTCAGGGATGTGTGTAATGCAGTCTTCGCTATGCACTGCCAGTCCCCACCTATTGCTCACCGagaCTTGAAAGCAGAGAATCTTTTGTTAAGTTCAGATGGTTTATGGAAGTTGTGTGATTTTGGAAGCATTTCCACCAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGAATTGAGGAAGATAATATCAGGAAGTACACAACCCCCGCCTACAGAGCTCCTGAGATGTGGGATCTGTTCCTGAAAGAAGTAATTAATGAGAAAGTGGACATATGGGCACTTGGTTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCATTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGATTCACCTAAATTCAGTTCAACCCTCACAGACTTGATCAGAGACATGCTTCAAGCTAGACCAGATGATCGACCAGATATCACGCAGGTTTGGTTTCGTGTTAATGAGCAGCTGCCTATTGATTTACAAAAGTCATTACCTGACAGGCCACCCGAATCACCCTCCTCCAACAATCACGAAGgTGCTTCAATGTCTACACACAAATCAAGTCCAATGCCTCGCAGAAATGCGCCTCCTCCTCCATCAGTTGGAGAACCCAAAACTACCCCTCAGCCATCTCTTGCTCCTAGGGGAGGGGAAAGTGGGGGTCAGCTTGGTGCTTTCTGGTCCACTATGCATGCAAAGGATTCACTTGTCCCTGAGGAAAAGGGAAAAGCAATATATGATGAAGAACGATCTAGTCACCATATTTCATCAAAACATGACAGAGTTCGTCCGGACACTGATCAGTTGCCCAAAAATGTTGGTACTAAGAAAGTGGCTAACACACAAACTCAGACTGTAAAGAGTAACATACATGGAAAATTACACAAGTCTGATGCTGCATCTGCCAAGGactttgaaattaattttttccctGATACAGATCATGCAAGTCAGGGACATATGTCGAATctggagaagaagaaagataacTTCCAAGACCAGACTTTTAACACTTTTGTTGCAGAATTTGATACTACTAAGCTTAACTCCGGGCATGGTAACAAATCCACAAGGGAAGAAGCATTAGAGTCTGAGGTGGAGAAACTCAAAGAGCAGCTGAAGGAAACTAACTTAGAGAAATCTGAAATAACTGCTAAGTATGAAAAGCTTACTGCTATCTGCCGTTCACAAAGGCAAGAACTGCAGGATCTCAAGCAAACACTTGCAGCAAGAACTCCATCTCCAAATAGAGAGATTTTGAGAACCTCACCTGGAGTTGCATCACCTGCGTCTTTGCAGGATAGAAGTGAATGGAAAACTCCTAGTTCAGAACCAAAGTCGTCATGGCAAGCTTTCCCAGATGCAACTGAATCGTTGAAGTCCCTTTCAGCAGACAATGCTTCAAAATCTGTTAGGTCAAGAAATGGTCAGCAGAACAAGCAGGCTACTCAACCTACTCAACCAGCTTCTGATTTTGATTCTTGGGGTTTTGGCACAGATACATTTAGCGCTGCTCGTGCTGCTAGTGGTAGCCAACAGATGCCAAGACCTGGTGAAGGGAGTAAAGCTCATGTTTTTGGTGAGGTAAAGGGTTTTGAGAGCAAGTCAAATTCTCAACCTGCTGGATGGGCTGGTTTTTAA	2064	0.4225	MWKFKPFMHKEQNGLEGRSIDVGNLKINVHKVIAEGGFSCVYLARDAVHMSKQYALKHIICNDEESLGLVKREISVMKLLIGHPNVVKLHAHAIYDMGRTKEAFLVMEFCEKSLVSVLESRGAGYFDEKQVLLIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLSSDGLWKLCDFGSISTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLKEVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDSPKFSSTLTDLIRDMLQARPDDRPDITQVWFRVNEQLPIDLQKSLPDRPPESPSSNNHEGASMSTHKSSPMPRRNAPPPPSVGEPKTTPQPSLAPRGGESGGQLGAFWSTMHAKDSLVPEEKGKAIYDEERSSHHISSKHDRVRPDTDQLPKNVGTKKVANTQTQTVKSNIHGKLHKSDAASAKDFEINFFPDTDHASQGHMSNLEKKKDNFQDQTFNTFVAEFDTTKLNSGHGNKSTREEALESEVEKLKEQLKETNLEKSEITAKYEKLTAICRSQRQELQDLKQTLAARTPSPNREILRTSPGVASPASLQDRSEWKTPSSEPKSSWQAFPDATESLKSLSADNASKSVRSRNGQQNKQATQPTQPASDFDSWGFGTDTFSAARAASGSQQMPRPGEGSKAHVFGEVKGFESKSNSQPAGWAGF	687

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g00548	687	MobiDBLite	consensus disorder prediction	673	687	-	-
	Tsu03g00548	687	CDD	STKc_GAK_like	26	298	-	-
	Tsu03g00548	687	ProSiteProfiles	Protein kinase domain profile.	27	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00548	687	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Tsu03g00548	687	MobiDBLite	consensus disorder prediction	301	365	-	-
	Tsu03g00548	687	Coils	Coil	493	548	-	-
	Tsu03g00548	687	Gene3D	Transferase(Phosphotransferase) domain 1	10	305	-	-
	Tsu03g00548	687	SUPERFAMILY	Protein kinase-like (PK-like)	28	341	IPR011009	-
	Tsu03g00548	687	MobiDBLite	consensus disorder prediction	547	687	-	-
	Tsu03g00548	687	SMART	serkin_6	27	291	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00548	687	PANTHER	SERINE/THREONINE PROTEIN KINASE	1	675	-	-
	Tsu03g00548	687	MobiDBLite	consensus disorder prediction	390	408	-	-
	Tsu03g00548	687	MobiDBLite	consensus disorder prediction	390	413	-	-
	Tsu03g00548	687	MobiDBLite	consensus disorder prediction	308	331	-	-
	Tsu03g00548	687	Pfam	Protein kinase domain	29	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00548	687	MobiDBLite	consensus disorder prediction	332	346	-	-
	Tsu03g00548	687	MobiDBLite	consensus disorder prediction	547	638	-	-
	Tsu03g00548	687	PANTHER	NUMB-ASSOCIATED KINASE, ISOFORM A	1	675	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g00548	Tsu-Chr3	4634427	4638925	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g00548	26	292	Miscellaneous Gene Families	AT2G34180	30.605	6.38e-22	98.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Tsu03g00548		Pkinase	2.9e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g00548	K08853		-	gmx:100780879	1031.17