Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00544 ATGGGAGCCAAAGGTCCTTCCCTTCTCTTTCTTTTATCTCTGGCTACCCTTTTGGCTGTTGTCACTGCACAAACCACTCCATCACAAAAAGTGCAACCAAGTCACTATGCTTCAACATTCAATAGAACCCTTTTTCCTAAAGATTTTCTATTTGGAATTGGTTCTTCTGCTTACCAGGTTGAAGGAGCTTCAAATATAGATGGGAGAGGACCAAGTATATGGGACACCTTCACTAAACAACATCCAGATAAGATTTGGGACCATAGCAGTGGTAACATAGGATCAGACTTTTATCATCGATACAAGAGTGACATCAAGGTGGTAAAGGAAATTGGGTTGGACTCGTATAGATTCTCTAtctcatggtcaagaatattcCCAAagggcAAGGGTGCGGTCAATCCCTTGGGAGTTAAGTTCTATAACAATCTCATTGATGAGATCCTAGCAAATGGCTTAATACCCTTTGTAACTCTCTTTCATTGGGATCTCCCACAAAGTCTTGAAGATGAATATATGGGATTTCTAAATCAAAAAGTAGTGAaggattttgaaaattatgCTGAGTTTTGCTTCAAGACATTTGGAGATAGGGTTAAGCATTGGGCTACACTTAATGAACCTTATTCCTTCACCATAAATGGATACCATGGTGGCACATTTGCACCTGGTAGATGTTCTAAATGGGTTGGAAGTTGTGAAGCTGGTGACTCAACTACAGAAACTTACATTGTTGCTCATAACTTGATACTTGCTCATGCTGCTGCTGTTAGAGTCTACAAGAGAAAATATCAAGCTCATCAAAAAGGACAAATTGGAGTGACCTTAGTGACTCACTTCTTTGAACCATATGACAATACTGACGCTGATCGCAAAGCTGCAAGACGAGCTCTTGACTTCTTTCTTGGATGGTTTGCTCATCCAATTACATATGGAACCTATCCCGAAATTATGGTATCATTATTAGGTAATAGACTCCCCAAATtcacaaaagaagaagttgCAATTATCAAAGGTTCCTATGATTTTCTTGGTGTAAATTATTACTCCACATATTATGCACAAAGCACTCCaccaaaatatatcaacatGACCTATTACACTGATATGCAAGCATTGGTCACTCCATTGAAGAATGGTTTATCTATTGGTCCTTCGACTGATTTGAACTGGCTCTATGTCTACCCGAAGGGAATTCATGGTCTTGTGACACACATAAGAGATGTTTACAACAATCCACCAGTGTACATTACTGAAAATGGTATTGCTCAAAATAGGAATGACTCAATTCCAGTCAATGTAGCTCGTAAAGATGGTGAAAGGATTAGATACCATGATGGCCATCTTAGATACATCCTTCAAGGAATAAAGGATGGTGCAAATGTCAAAGGCTACTATGCATGGTCATATACTGACAGTTATGAATGGGATGCAGGCTACACAGTACGATTTGGAGTCATTTATGttgattttaagaataatttgaAAAGATATCCCAAATATTCTGCTTTTTGGCTTCAAAAGTTCCTTCTCAAGGGATGA 1542 0.3677 MGAKGPSLLFLLSLATLLAVVTAQTTPSQKVQPSHYASTFNRTLFPKDFLFGIGSSAYQVEGASNIDGRGPSIWDTFTKQHPDKIWDHSSGNIGSDFYHRYKSDIKVVKEIGLDSYRFSISWSRIFPKGKGAVNPLGVKFYNNLIDEILANGLIPFVTLFHWDLPQSLEDEYMGFLNQKVVKDFENYAEFCFKTFGDRVKHWATLNEPYSFTINGYHGGTFAPGRCSKWVGSCEAGDSTTETYIVAHNLILAHAAAVRVYKRKYQAHQKGQIGVTLVTHFFEPYDNTDADRKAARRALDFFLGWFAHPITYGTYPEIMVSLLGNRLPKFTKEEVAIIKGSYDFLGVNYYSTYYAQSTPPKYINMTYYTDMQALVTPLKNGLSIGPSTDLNWLYVYPKGIHGLVTHIRDVYNNPPVYITENGIAQNRNDSIPVNVARKDGERIRYHDGHLRYILQGIKDGANVKGYYAWSYTDSYEWDAGYTVRFGVIYVDFKNNLKRYPKYSAFWLQKFLLKG 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00544 513 Gene3D Glycosidases 25 512 - -
Tsu03g00544 513 PRINTS Glycosyl hydrolase family 1 signature 415 423 IPR001360 GO:0004553|GO:0005975
Tsu03g00544 513 PRINTS Glycosyl hydrolase family 1 signature 438 449 IPR001360 GO:0004553|GO:0005975
Tsu03g00544 513 PRINTS Glycosyl hydrolase family 1 signature 483 495 IPR001360 GO:0004553|GO:0005975
Tsu03g00544 513 PRINTS Glycosyl hydrolase family 1 signature 340 354 IPR001360 GO:0004553|GO:0005975
Tsu03g00544 513 PRINTS Glycosyl hydrolase family 1 signature 459 476 IPR001360 GO:0004553|GO:0005975
Tsu03g00544 513 Pfam Glycosyl hydrolase family 1 43 509 IPR001360 GO:0004553|GO:0005975
Tsu03g00544 513 ProSitePatterns Glycosyl hydrolases family 1 active site. 415 423 IPR018120 -
Tsu03g00544 513 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 49 63 IPR033132 -
Tsu03g00544 513 PANTHER GLYCOSYL HYDROLASE 16 511 IPR001360 GO:0004553|GO:0005975
Tsu03g00544 513 PANTHER BETA-GLUCOSIDASE 17 16 511 - -
Tsu03g00544 513 SUPERFAMILY (Trans)glycosidases 35 510 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00544 Tsu-Chr3 4595824 4603680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00544 28 510 Glycoside Hydrolase AT5G44640 50.511 4.62e-179 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00544 K22279 - gmx:100783037 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00544 03 4595824 4603680 Tsu03g00544 03 4595824 4603680 ECH
Tsu03g00544 03 4595824 4603680 Tsu08g01613 08 19154751 19161673 PCT