Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00534 ATGGCTTCTCTACTCTCACAACCCAATTTCATTTCCTTAACAACTTACAACAACTTCAAACCCAAAACCACACTTCCTTCTTCTCTCCTCGTTGGAACTTCAACCACACGCCGTTTTAGGAGATACGCAACTGTTTCTGAACAAGCTACGGCGAATTCTCCTGCTGTTAGAAAGCTTTATGTTGGGAACATTCCTCGTACTGTCAGTAATGATGAACTTGCTCAGATTGTTCAAGAACATGGTGCTGTTGAGAAAGCTGagGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGCTTTGCATTTGTTACAATGAAAACCATTGAGGATGCAAATGCAGCAGCTGAGAAACTCAATGGCACTCAAATTGGAGGGCGTGAGATTAAAGTGAATATAACCGAAAAACCTTTAACCACGGGAGGTGTGTCACTCCAGGCTGGGGAGTCTGAATTTGTTGACAGTCCCTACAAGGTATATGTGGGAAATCTGGCTAAGAATGTAACATCTGATAGCCTTAAAAGTTTCTTTGAGAAAGGAAAAGCTCTTAGTGCCAAGATTTCACGGGTTCCTGGGACCACAAAATCCAGCGGTTTCGGTTTTGTCACATTTCCATCAGAGGAGGATGTAGAAGCTGCTATCTCATCTTTCAATGATGCTTTGTTAGAAGGTAAAAAAATCCGTGTGAATAAGGCGTAG 696 0.421 MASLLSQPNFISLTTYNNFKPKTTLPSSLLVGTSTTRRFRRYATVSEQATANSPAVRKLYVGNIPRTVSNDELAQIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTIEDANAAAEKLNGTQIGGREIKVNITEKPLTTGGVSLQAGESEFVDSPYKVYVGNLAKNVTSDSLKSFFEKGKALSAKISRVPGTTKSSGFGFVTFPSEEDVEAAISSFNDALLEGKKIRVNKA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00534 231 Gene3D - 147 231 IPR012677 -
Tsu03g00534 231 SMART rrm1_1 157 229 IPR000504 GO:0003723
Tsu03g00534 231 SMART rrm1_1 58 131 IPR000504 GO:0003723
Tsu03g00534 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 135 IPR000504 GO:0003723
Tsu03g00534 231 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 23 231 - -
Tsu03g00534 231 CDD RRM_HP0827_like 58 135 - -
Tsu03g00534 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 227 IPR000504 GO:0003723
Tsu03g00534 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 129 IPR000504 GO:0003723
Tsu03g00534 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 231 IPR000504 GO:0003723
Tsu03g00534 231 PANTHER OS02G0815200 PROTEIN 23 231 - -
Tsu03g00534 231 SUPERFAMILY RNA-binding domain, RBD 151 231 IPR035979 GO:0003676
Tsu03g00534 231 SUPERFAMILY RNA-binding domain, RBD 50 135 IPR035979 GO:0003676
Tsu03g00534 231 Gene3D - 33 146 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00534 Tsu-Chr3 4515079 4520938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00534 59 231 Eukaryotic Initiation Factors Gene Family AT3G16380 32.584 1.80e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00534 K13126 - gmx:100783567 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00534 03 4515079 4520938 Tsu03g00534 03 4515079 4520938 ECH