Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00531 atgagaaaaagaacaTTCCAAAAAACTCTTCTCCATCGAGTCAAGTCTTTCAAATCAAAACACTTAACCGCTGATGAAATCGTCAAATATCTCAAATCAGAGTATTTCACTGATTACCATCTACATGGAGATAAAAAACTGCTCCGCTTAGTTCAAATTGCTCTTCACCAAACCCATTCTTCCAAAAACATAGATCAACAACTTCAACCTCAACaagatcatgatgatgatgatgatagattGTTAATCAAACAAGAAGAAACTACTTTACATAATGACAAATCATCTATGTCATGTGATTCTGTTTTAGCTTCTGATTCTGAGTTTAATAACCGAGGAGAAAATGTTACGAATGATGTGAATGTTAGAAAGGATGGGCCGAGGTTTAAGGATTTAGGTGGAATGGATGAGGTAATTCAAGAGTTGAAGGTGAAGATTCTTATGCCATTGTTTAATCCTAAGTTGTGTGAAAGGATTGGTGTTAAGCCAATAAATGGCTTATTGTTGCATGGAATGCCTGGTTGTGGGAAGACTAAACTTGCTCATGCTATTGCTTATGAGACTGGTTTTACTTTCTATCCTACTTCTGCTACTCAACTTGTTTCTGGAATCTCAGGTGCATCTGAAGAAAGTATCAGAGAGCTTTTCGCTCAAGCAAAAAGGACTGCTCCATCAATTATCTTTATCGACGAGATTGATGCAATTGCAACCAAAAGAGATAATACACAGCGTCTGATGGAGACACGAATTGTGACACAGTTAATGATTTGTATAGAGAAAGCTAATGATGATTCAGAGGCTTCTGACGAACCTCATCGCCATGTTCTTGTAATTGGAGCAACAAATAAGCCCAATGCTATTGACTCTTCTTTGAGAAGGCCTGGTCGTTTTGATCGTGAGATAACTATTGGTATTCCTGATGAATCTGGCAGGGAGAAGATTCTTACCGTGGTTACTCGTAAACAAAATCATGACAGTTCTGTTGATTTGCGAAAATTAGCCAAGTCTACGTCAGGATTTGTTGGTGCTGATTTAGAAGCTCTAGCCAATGAGGCTGGCATTGTGGCAATGAATAGGATAAGTAATGAAATGAAACTTAAATTATCTCAAGATCTCACAAATGAGCCCGATGAAGATTCGTGGAAGAAACCTTTGTTGTCTGATGATGATATAGAGAAATGTGCAATCACAATGTCTGATTTTGAGGAAGCAATCAAAACGGTGCAACCCTCATTAACAAGAGAAGGATTCAGTGCCATACCTAATGTTAAATGGGAAGATGTTGGTGCGCTTGATCATGTAAGAGAGGAGTTTGATAACCACATTCTAAAACCTATAAAACATCCTGATGATTTTAAGGAATTTGGGGTGAAACCTGAGACGGGATTTTTACTGTATGGGCCTCCAGGCTGTGGAAAAACATTGATTGCCAAAGCTGTTGCGAATCAAGCAGGATTTAATTTCATTCATGTTAAGgGGCCAGAGATTCTAAATAAATATGTTGGAGCAAGTGAACAAGAAGTCCGGACAATATTTAGTCGTGCAAGGGCATGTGCAccttgtataattttttttgacgagGTGGATGCTTTGACACCAGACCGTGATTATGAAAGTGGACAGGTTCTTAAAGGAGTGGTGGACCAGTTGCTTGTTGAGTTAGATGGTGGAGAACAGCGCAAAGGTGTTTTTGTGATCGGTGCAACAAATAGATTTGACGCAATAGACGAGGGTTTAAAACGGCCTGGTAGATTTGGTATACAACTTGAGGTTCCTCTTCCAAGCCCAGACGACCGTGTTAAAATATTGGAAACTCTTGCAAAGGATAGGCCTATTGATAACAGTGTGGATTTGAGTGTCATTGGAAGAATGAAAGAATGCGAAAACTTTAGTGGCGCCGATCTTGCGGCATTGATGAATGAAGCAGGGATGGCTGCACTCATTGAGAAGTGGAACTCAACCGACAAAAACATTGACACCATCAAGACATGTCATTTTGAGGTAGCATTTACTAAAGTATCTCCCTCTGTGTCGAAAAAGCAAAGGGAGtcctataaaaattattcaaaaagcTCTAAAGCAGTATCAGTTTCAGAGGCAGCAATATAG 2109 0.3793 MRKRTFQKTLLHRVKSFKSKHLTADEIVKYLKSEYFTDYHLHGDKKLLRLVQIALHQTHSSKNIDQQLQPQQDHDDDDDRLLIKQEETTLHNDKSSMSCDSVLASDSEFNNRGENVTNDVNVRKDGPRFKDLGGMDEVIQELKVKILMPLFNPKLCERIGVKPINGLLLHGMPGCGKTKLAHAIAYETGFTFYPTSATQLVSGISGASEESIRELFAQAKRTAPSIIFIDEIDAIATKRDNTQRLMETRIVTQLMICIEKANDDSEASDEPHRHVLVIGATNKPNAIDSSLRRPGRFDREITIGIPDESGREKILTVVTRKQNHDSSVDLRKLAKSTSGFVGADLEALANEAGIVAMNRISNEMKLKLSQDLTNEPDEDSWKKPLLSDDDIEKCAITMSDFEEAIKTVQPSLTREGFSAIPNVKWEDVGALDHVREEFDNHILKPIKHPDDFKEFGVKPETGFLLYGPPGCGKTLIAKAVANQAGFNFIHVKGPEILNKYVGASEQEVRTIFSRARACAPCIIFFDEVDALTPDRDYESGQVLKGVVDQLLVELDGGEQRKGVFVIGATNRFDAIDEGLKRPGRFGIQLEVPLPSPDDRVKILETLAKDRPIDNSVDLSVIGRMKECENFSGADLAALMNEAGMAALIEKWNSTDKNIDTIKTCHFEVAFTKVSPSVSKKQRESYKNYSKSSKAVSVSEAAI 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00531 702 SMART AAA_5 459 595 IPR003593 -
Tsu03g00531 702 SMART AAA_5 163 307 IPR003593 -
Tsu03g00531 702 Pfam ATPase family associated with various cellular activities (AAA) 464 592 IPR003959 GO:0005524|GO:0016887
Tsu03g00531 702 Pfam ATPase family associated with various cellular activities (AAA) 167 304 IPR003959 GO:0005524|GO:0016887
Tsu03g00531 702 PANTHER AAA-FAMILY ATPASE 65 690 - -
Tsu03g00531 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 690 IPR027417 -
Tsu03g00531 702 Gene3D - 114 305 IPR027417 -
Tsu03g00531 702 Gene3D - 594 671 - -
Tsu03g00531 702 Pfam AAA+ lid domain 327 402 IPR041569 -
Tsu03g00531 702 Pfam AAA+ lid domain 615 667 IPR041569 -
Tsu03g00531 702 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 65 690 - -
Tsu03g00531 702 CDD AAA 133 304 - -
Tsu03g00531 702 CDD AAA 462 593 - -
Tsu03g00531 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 416 IPR027417 -
Tsu03g00531 702 ProSitePatterns AAA-protein family signature. 275 293 IPR003960 GO:0005524|GO:0016887
Tsu03g00531 702 Gene3D - 306 415 - -
Tsu03g00531 702 Gene3D - 421 686 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00531 Tsu-Chr3 4494108 4498725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00531 159 676 Calmodulin-binding Proteins AT3G56690 35.889 2.31e-107 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00531 K14571 - gmx:100809594 720.694