Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00529 ATGGTTCGCTCCAATGGCATCAAGTTTCTTCGTTCTCTTTCCCCTCAACTTCTCCGTAACGCTGAAAAATCTATATATGGAGGAGTGCTTCAAAGGGGTTATAGAACATTGAATTCAAGATTTTGTAATCCTTCCAAAGTTATTGGAAATTCTTTTCCCAATGTTGGAGATGGTGTTAATTTGAAGAATTGGGTGCTATTGGGAGCAGCGAATACTTATTTCGGGGCATCTAGATCGATTCATGGCTCGGCATCATTGGCACGAGATTTTTATGATGTTCTTGGAGTTGGTAATAAAGCAAGTTCTTCTGAAATAAAGAAAGCATACTATGGGCTTGCAAAAAAGCTCCACCCTGACACAAACAAAGATGATCCTGACGCTGAAAAGAAATTTCAAGAAGTTTCAATGGCATATGAGGTTTTGAAGGACGAGAAAAAGCGTGAAGAGTATGATCAGGTTGGCCATGATAATTATATAAAGCAACAAAGCAATGATTTTGGAGGCGGCGGTGGCTTTCATAATCCCTTCGAGGATATATTCCCTGGTTTTGGCAACATCTTTAATCAGAACATCGGCGGACAGGATGTCCAGACTTTGGTTGAACTTTCTTTTATGGAAGCTGTCCAAGGATGCACCAAAACTGTTACATTTGAAACCGAGATACTTTGTAACACTTGTGGTGGAAGCGGGGCTCCTCCTGGTACAAGACCTGAAACCTGTAAGCGCTGTAAAGGGTCAGGAGTGACATATGTACAAGCTGGCATGATTAGGATGGGGGTTGACTGTGGTGCATGTAGGGGAACTGGCAAAATTGTAAAGAGTTTCTGCAAGTCATGCAGGGGTGCAAAGCTTAACAAAGGAACAAAGTCAGTCAAAGTGGATATTAAGGCTGGGACTGACAACAATGAAACCCTTAAGGTTTTCAGAAGTGGTGGTGCAGATCCTGATGGAGATCGTCCTGGTGATCTTTATGTTACTATCAAGGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGGTCTCATATTCATGTAGATACTGTTTTAAGTATCACTCAGGCAATTTTGGGCGGAACTATTCAGGTCCCGACTCTTACTGGGGATGTTGTTCTTAAGGTGCGTCCTGGAACACAACCGGGTCAAAAGGTGGTTCTGAAAAACAAAGGGATCAAGGGCAAAAATTCTTATACATTAGGCAATCAATACGTTCATTTTAACGTCGGCATCCCAGTAAACCTAACACAAAGACAGCGGGAATTGATTGAAGAGTTTCAAAAGGAAGAGCAAGAAGAATCTTCTGATAAAGACAAAGCTGCTTCAGCTTCCGGTTGA 1329 0.4214 MVRSNGIKFLRSLSPQLLRNAEKSIYGGVLQRGYRTLNSRFCNPSKVIGNSFPNVGDGVNLKNWVLLGAANTYFGASRSIHGSASLARDFYDVLGVGNKASSSEIKKAYYGLAKKLHPDTNKDDPDAEKKFQEVSMAYEVLKDEKKREEYDQVGHDNYIKQQSNDFGGGGGFHNPFEDIFPGFGNIFNQNIGGQDVQTLVELSFMEAVQGCTKTVTFETEILCNTCGGSGAPPGTRPETCKRCKGSGVTYVQAGMIRMGVDCGACRGTGKIVKSFCKSCRGAKLNKGTKSVKVDIKAGTDNNETLKVFRSGGADPDGDRPGDLYVTIKVREDPVFRREGSHIHVDTVLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKGKNSYTLGNQYVHFNVGIPVNLTQRQRELIEEFQKEEQEESSDKDKAASASG 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00529 442 PRINTS DnaJ domain signature 126 146 IPR001623 -
Tsu03g00529 442 PRINTS DnaJ domain signature 146 165 IPR001623 -
Tsu03g00529 442 PRINTS DnaJ domain signature 109 124 IPR001623 -
Tsu03g00529 442 PRINTS DnaJ domain signature 91 109 IPR001623 -
Tsu03g00529 442 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 210 284 IPR036410 -
Tsu03g00529 442 Gene3D - 215 286 - -
Tsu03g00529 442 MobiDBLite consensus disorder prediction 423 442 - -
Tsu03g00529 442 Gene3D - 196 328 - -
Tsu03g00529 442 SUPERFAMILY HSP40/DnaJ peptide-binding domain 334 420 IPR008971 GO:0006457|GO:0051082
Tsu03g00529 442 CDD DnaJ_C 194 412 - -
Tsu03g00529 442 Pfam DnaJ C terminal domain 197 409 IPR002939 -
Tsu03g00529 442 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 30 442 - -
Tsu03g00529 442 CDD DnaJ 89 143 IPR001623 -
Tsu03g00529 442 ProSitePatterns Nt-dnaJ domain signature. 131 150 IPR018253 -
Tsu03g00529 442 Gene3D - 330 440 - -
Tsu03g00529 442 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 30 442 - -
Tsu03g00529 442 Hamap Chaperone protein DnaJ [dnaJ]. 86 440 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Tsu03g00529 442 Pfam DnaJ domain 89 151 IPR001623 -
Tsu03g00529 442 ProSiteProfiles dnaJ domain profile. 89 154 IPR001623 -
Tsu03g00529 442 ProSiteProfiles Zinc finger CR-type profile. 210 288 IPR001305 GO:0031072|GO:0051082
Tsu03g00529 442 SMART dnaj_3 88 146 IPR001623 -
Tsu03g00529 442 SUPERFAMILY HSP40/DnaJ peptide-binding domain 195 330 IPR008971 GO:0006457|GO:0051082
Tsu03g00529 442 Gene3D DnaJ domain 86 195 IPR036869 -
Tsu03g00529 442 SUPERFAMILY Chaperone J-domain 88 188 IPR036869 -
Tsu03g00529 442 Pfam DnaJ central domain 223 283 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00529 Tsu-Chr3 4481840 4489804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00529 82 151 C2H2 Transcription Factor Family AT1G74250 40.000 6.46e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00529 K03686 - gmx:100784630 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00529 03 4481840 4489804 Tsu03g00529 03 4481840 4489804 ECH