Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00526 ATGCTAAAGGGTAAGCAGTCATTGTCAAGTGAGGATGATAGTCGCAAAATGTTAAAGCTTAATCGACCATCATCATCAAGCGGAGATGTTGGCTGCAAAAGGATAAAGCGTAGTCAGTCGGCATTATTAGGTGAAGAGGATGATCAAGGACGTAACACGGATGGAGAAGGTATATTGAGAGTTATGAGTAGCACTTCTAGTGGAGATGATGGTCACAAAACTCTAAAGCGTAGTTGGTCATCGTTAGCGAGTGAGGATGATGATAGTCACAAAATGCTAAAGCGTAACTGGTCATCGTCATCAAGTTTGGATGATGACTGCAAAAGGATAAAGCGTAGTGAGTCATCATTATCGGGTGAGGAAGATGACGACGAAGATGATCATGGAGGTAGCTCGGGAGGAGGAGAAGAAGGTAGTCTTAAGAAAGGTACATGGACATCAGCAGAAGATGAAATTTTGGTAGAGCATGTTAAGAAATACGGATTGGGAAATTGGAATGCGGTGCAAAAGTATTCCGGACTTGCTCGCTGTGGGAAAAGCTGTCGTCTACGATGGGCAAACCATTTGAACCCAGAACTGAAAAAGGGTGAATTTActgatgaagaaaaaaagaaagtccTTGAACTCCACTATTCGATGGGAAACAAATGGGCTCGAATGGCTGCAATGATGCCTGGACGTACAGATAATGAGATAAAGAACTATTGGAACACGAGAGCTAAGAGACTACGACGAGCTGACTTACCACTCTACCCTGAAGAGATATCCAAAAATCCGTTAAAGGGCAATGAAGAAAATGACGACACAAATGAAGCGGGTCAGTGTGATGAAACAGAAAACTACAATATACCTGTTGTGGAATTTAAAGATTACAAATTCCACCCAGGTATGTTACCACCATGTTTTGATATTACCACATTGATCGAGCGTCCCTCAAAGCGCCCTTGTGAGTCCAATATGATATACAGTGATTTGGGCGGTTGTAGCAGCAGTGGTGCTGTCCAAGAAGTATTTGATCAGTACGGCAAATATCCAATGTTTTCTACTCCATATGATCCGATTCCTTACACCAACCCTCAGTTTCATGGATATGATAACATTCTGGATGGTATTCACACCGTACCAAATGTCTCTTCTTCTGAGCCCATATACGGTTCCATGAGGTATGAGCTCCCTTCACTCCAATATTTACAGACTCAGCAATATAGCTGGTCTGCGTCGCCACTTACTTCACATGAGTCCGTCGACACAATGATTCACTCTTCTCCTACTGAGCTTTATCAGTCATCTCCAAATGAGCCTTATCAGCTATCTCCGAATGAGCCTTATCAGTCAGTTCCAACTTCTCCAGAGAGTAGTCATTTTCTCGATACAATATTACACTCCAATGATGATTATTTTCAAGAGAAAATTGATAACACCGCGCCAAATGAAGCAGACACTAGTACACAGTGGAATGTACTAGATGACCAGTCTGGTGCTTCATTTATGCCATCTGACTATAATACTCATCACATTAACATGTGGTCAATTGATCGATCCCACTTGGTCGAAACCACTCAAGATCATgaaaatttgaatcaaatagATTTTGCTCGCCCAGATGCTATGCTTGAATCCGGTTGGCGCATGAAGAATAAATGA 1644 0.4124 MLKGKQSLSSEDDSRKMLKLNRPSSSSGDVGCKRIKRSQSALLGEEDDQGRNTDGEGILRVMSSTSSGDDGHKTLKRSWSSLASEDDDSHKMLKRNWSSSSSLDDDCKRIKRSESSLSGEEDDDEDDHGGSSGGGEEGSLKKGTWTSAEDEILVEHVKKYGLGNWNAVQKYSGLARCGKSCRLRWANHLNPELKKGEFTDEEKKKVLELHYSMGNKWARMAAMMPGRTDNEIKNYWNTRAKRLRRADLPLYPEEISKNPLKGNEENDDTNEAGQCDETENYNIPVVEFKDYKFHPGMLPPCFDITTLIERPSKRPCESNMIYSDLGGCSSSGAVQEVFDQYGKYPMFSTPYDPIPYTNPQFHGYDNILDGIHTVPNVSSSEPIYGSMRYELPSLQYLQTQQYSWSASPLTSHESVDTMIHSSPTELYQSSPNEPYQLSPNEPYQSVPTSPESSHFLDTILHSNDDYFQEKIDNTAPNEADTSTQWNVLDDQSGASFMPSDYNTHHINMWSIDRSHLVETTQDHENLNQIDFARPDAMLESGWRMKNK 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00526 547 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 124 542 - -
Tsu03g00526 547 ProSiteProfiles Myb-like domain profile. 190 240 IPR001005 -
Tsu03g00526 547 ProSiteProfiles Myb-like domain profile. 137 189 IPR001005 -
Tsu03g00526 547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 193 IPR017930 -
Tsu03g00526 547 SUPERFAMILY Homeodomain-like 140 236 IPR009057 -
Tsu03g00526 547 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 124 542 - -
Tsu03g00526 547 MobiDBLite consensus disorder prediction 1 144 - -
Tsu03g00526 547 MobiDBLite consensus disorder prediction 101 118 - -
Tsu03g00526 547 Pfam Myb-like DNA-binding domain 142 189 IPR001005 -
Tsu03g00526 547 Pfam Myb-like DNA-binding domain 195 238 IPR001005 -
Tsu03g00526 547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 244 IPR017930 -
Tsu03g00526 547 MobiDBLite consensus disorder prediction 1 19 - -
Tsu03g00526 547 MobiDBLite consensus disorder prediction 254 277 - -
Tsu03g00526 547 Gene3D - 197 243 - -
Tsu03g00526 547 SMART sant 141 191 IPR001005 -
Tsu03g00526 547 SMART sant 194 242 IPR001005 -
Tsu03g00526 547 MobiDBLite consensus disorder prediction 70 94 - -
Tsu03g00526 547 Gene3D - 139 195 - -
Tsu03g00526 547 MobiDBLite consensus disorder prediction 39 54 - -
Tsu03g00526 547 CDD SANT 197 238 IPR001005 -
Tsu03g00526 547 MobiDBLite consensus disorder prediction 419 452 - -
Tsu03g00526 547 CDD SANT 144 189 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00526 Tsu-Chr3 4472648 4474701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00526 115 461 MYB Transcription Factor Family AT3G11440 36.409 1.95e-63 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu03g00526 Myb_DNA-bind_6 5.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00526 K09422 - gmx:100800658 363.999