Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00524 ATGAGTATTATGTATGAAGAGctaagaagaaaccaagaaATGGATTCTGTAAATATTATTCATTCCAAAcactatcatcaacaacatAATTCTGGACTACTTATGAGGTACAATTCAGCTCCAACCTCATTGCTTACAAGCCTTATTGACAACAACACTCAAAGCTATCTAAACAATGAAGAATCTTTTACAAGTGAGAGTTCAAGTTCAGAAATGGATACTATGTTGTCTAAGTTGATATCATCAAACAATGGATGGAACAATTCTGAAGAACCTTTGCAAGAGTTTGATGTGAAGCCTGTGAAGCAAGAAATAGGTGAATCTGTTCCACAAAATGGTGATTACTCTTATGGTGGATCTGAGTTGATTTACCAAGGCTTTTCAAATGGTTCTAGTAATGGTTTTTATGGATCTTTTGATGGAGTTAACTCTAAAATTGGTGTGAGGAATTCTTCTTCCAATCTAATTAGGCAAAAAAGCTCACCTGCTGGATTTTTCTCTAATGAAAATGTTGAAGGTCTTGCAACATTGAGAGAGTTAGGAAGCTTTAAAGCCAATGAAGTCTCAAATGGTACACTTAACTTCTCATCTAGGCCATCTACTTGCTTGAAAAGGATGCCACAAATAGCTGAAAATGGAATCCAAACCATAGAAGCAAATTGTGACCAAACAACAAACCTAGTAAATGAAAATGGTAACTCAAAATATCACATTCCAAGCTTCACCAATGAATTTTGGGACAATTCTACATTCAATGCTCAAAAAAcagaaattgaagatgaaatAATGTTTTCTACTTCAAATGGTTTAGAATCTCAAGAAGCAGATTTTTGCTATCAAAATCTTGGATTGACTCATCATTTGAGTTTGCCTAGTTCATCTACAAAGATATCATCATCCATGGAGAAgtttcttcaagttcaaggATCTGTTCCTTGTAAAATTCGAGCGAAAAGAGGCTTTGCAACTCATCCTAGAAGCATTGCCGAGAGGGTAAGAAGAACGCGAATAAGTGAAAGAATCAAGAAATTGGAGAGTCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACTTGCAAGAACAAGTTCAGATACTCACAGTTCGTAAGGAAAAATGCAAATGTACAAGTCATGCGAAGCAACACTCTAGACAATGCAGTTGA 1200 0.3358 MSIMYEELRRNQEMDSVNIIHSKHYHQQHNSGLLMRYNSAPTSLLTSLIDNNTQSYLNNEESFTSESSSSEMDTMLSKLISSNNGWNNSEEPLQEFDVKPVKQEIGESVPQNGDYSYGGSELIYQGFSNGSSNGFYGSFDGVNSKIGVRNSSSNLIRQKSSPAGFFSNENVEGLATLRELGSFKANEVSNGTLNFSSRPSTCLKRMPQIAENGIQTIEANCDQTTNLVNENGNSKYHIPSFTNEFWDNSTFNAQKTEIEDEIMFSTSNGLESQEADFCYQNLGLTHHLSLPSSSTKISSSMEKFLQVQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLESLFPKSDKQTSTADMLDLAVEYIKDLQEQVQILTVRKEKCKCTSHAKQHSRQCS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00524 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 324 387 IPR036638 GO:0046983
Tsu03g00524 399 SMART finulus 327 377 IPR011598 GO:0046983
Tsu03g00524 399 Pfam Helix-loop-helix DNA-binding domain 327 372 IPR011598 GO:0046983
Tsu03g00524 399 Gene3D - 323 397 IPR036638 GO:0046983
Tsu03g00524 399 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 23 391 - -
Tsu03g00524 399 CDD bHLH_AtbHLH_like 326 378 IPR045239 -
Tsu03g00524 399 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 23 391 - -
Tsu03g00524 399 Coils Coil 368 388 - -
Tsu03g00524 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 321 371 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00524 Tsu-Chr3 4445344 4448682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00524 34 384 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 35.772 1.88e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu03g00524 HLH 5.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00524 - - gmx:100812802 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00524 03 4445344 4448682 Tsu08g01287 08 14551792 14556225 ECH
Tsu03g00524 03 4445344 4448682 Tsu03g00524 03 4445344 4448682 ECH