Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00519 ATGGCTCAGAGAACAGAAAATGAAGAAACCGAATTCAAAGTTGTACCAAAAACAATAACGCTTTGTATCAACATCTGTGGCGTAATCGGTAACGCTTCAACAAACAACATGTGTCAGAATTGTTTCACGGCGTCAACTGTAACAACCTCTTCAACCACCGTTGGAATCGGAAACGGAATATTAACTCAATCTTCTAGATCTGTTCGTTCTTTGAAGAGATCTTTACCGGAGGAATCGTTGATTGTTACTGATCGGAGTTTGTTAGATCAAACGACGTTTTCTGAGGTGAAGCGTGTTGTAAGTCGTTGCTCTGGTTGCCGGAAAAAGGTAGGGTTGACCGGATTCCGATGTAGATGCGGTGATCTTTTCTGTTCGGAACATCGATACTCCGATCGTCATGATTGTAGCTATGATTATAAAGCTGCTGGAAGAGAAGCGATTGCGAAGGAGAATCCTGTTATCAGAGCCGCGAAGATTGTTAAAGTCTGA 489 0.4233 MAQRTENEETEFKVVPKTITLCINICGVIGNASTNNMCQNCFTASTVTTSSTTVGIGNGILTQSSRSVRSLKRSLPEESLIVTDRSLLDQTTFSEVKRVVSRCSGCRKKVGLTGFRCRCGDLFCSEHRYSDRHDCSYDYKAAGREAIAKENPVIRAAKIVKV 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00519 162 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 162 - -
Tsu03g00519 162 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 5 1 162 - -
Tsu03g00519 162 SUPERFAMILY AN1-like Zinc finger 90 156 IPR035896 -
Tsu03g00519 162 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 54 - -
Tsu03g00519 162 SMART AN1_Zf_4 103 140 IPR000058 GO:0008270
Tsu03g00519 162 Gene3D - 83 158 IPR035896 -
Tsu03g00519 162 ProSiteProfiles Zinc finger A20-type profile. 16 50 IPR002653 GO:0003677|GO:0008270
Tsu03g00519 162 Gene3D - 1 70 - -
Tsu03g00519 162 ProSiteProfiles Zinc finger AN1-type profile. 97 143 IPR000058 GO:0008270
Tsu03g00519 162 Pfam A20-like zinc finger 21 42 IPR002653 GO:0003677|GO:0008270
Tsu03g00519 162 Pfam AN1-like Zinc finger 103 140 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00519 Tsu-Chr3 4395078 4396177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00519 16 162 C2H2 Transcription Factor Family AT3G52800 36.747 4.28e-32 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00519 - - pvu:PHAVU_005G036400g 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00519 03 4395078 4396177 Tsu08g01293 08 14607089 14608059 ECH
Tsu03g00519 03 4395078 4396177 Tsu03g00519 03 4395078 4396177 ECH