Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00516 ATGTCCACAAGGGTTTGCAAGTTCTATGCCAGAGGGGTATGTTTGAAAGGGGAGCAATGTGATTTTGCACATCAAAGAAAGGATACTCCAGTTGATGTTTGCTCTTATTATCAGAAAGGGTCTTGTGCTTATGGTAGTCGATGCAGATATAAGCATGTCAGAGCTTCTCAAGCATCATCTTCTGCGTCTATGGTTTCAGATTCTGCTAAAGTAGCATCAAATTGGGTTCCTAAGGTTACTAAGGCTCCTGCACCTGACAAGCGTGCCGTAAGGAGTTTACAACGCAAGCATCAGGACTTTAGTGATGTTGGTGAATCTAGTACTGCAAGTGCTAGGCCGCATGATATATTTTGTACATTTGCTGCAGCCAATTGCCCCCTTGGAGATGGATGTTCTCGTGTTCATGGAAATCAATGCTTGTACTGCAGAAAATATTGCTTGCATCCGACTGATAAAAAGGAAAAGGAGAGTCATTTGAGGACTTGtgacaaaaaggaaaagtaCCTTCTGGCTTTGAAAAATAGTGAAGAAATAGAATGCAATGTTTGTCTGGAGCGTGTCCTTTCCAAACCCAAACCATCAGAATGTAAGTTTGGGCTGCTTCCAGAATGCGATCATGCTTTCTGCTTGTCATGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGAATGGAAATCAGTAGTAATTCCAATACTGTGAGAACCTGTCCTGTTTGCCGCAAACTGTCATATTTTGTCATTCCAAGTGGTATTTGGTTTACTACAAAGGAAGAAAAACAGGAAATTATTGATAACTACAAGGCAAACTGCAGATTGATTGATTGCAAACATTTTGACTCTGGAAATGGGAATTGTCCATTTGGAGCTAGTTGTTTCTACAAGCATACAGTGAAGCCTGGGTCATACACATGGGTAAACCGCAGGCCACCACCTCAACGTAGACCAAACAATTATGATATGTATGATGTGTTGGATATGCTCAGTGAAGTTGATTTATCAAGTGGAGAATTTTACAACATCATGAGAGACTCCGAGTTTTTTGACGGGATGGATCCATTTGAAATGATGGCTTTGTCAGATTCGCTTGCTGGTGGTTCGGGTCCTTGTTTGGGTCCTTTTGATTCTGACGACGAGAATGAATTTGATGTTTTTCGAATGGCTGCTATGTCAGAGGCCCTGGCTTCTGGGGTGGATGATTTTGGCCcggatgattttgatgatgaagaatttgatCCTATGGAGGCAGCTTTGTTATCAATGATGATGCATTCTCATATGGAAGACGAAGATGAAGACGACGAAGAAGAATACAGTGACGATGAATATTAG 1332 0.4069 MSTRVCKFYARGVCLKGEQCDFAHQRKDTPVDVCSYYQKGSCAYGSRCRYKHVRASQASSSASMVSDSAKVASNWVPKVTKAPAPDKRAVRSLQRKHQDFSDVGESSTASARPHDIFCTFAAANCPLGDGCSRVHGNQCLYCRKYCLHPTDKKEKESHLRTCDKKEKYLLALKNSEEIECNVCLERVLSKPKPSECKFGLLPECDHAFCLSCIRNWRNSAPTSGMEISSNSNTVRTCPVCRKLSYFVIPSGIWFTTKEEKQEIIDNYKANCRLIDCKHFDSGNGNCPFGASCFYKHTVKPGSYTWVNRRPPPQRRPNNYDMYDVLDMLSEVDLSSGEFYNIMRDSEFFDGMDPFEMMALSDSLAGGSGPCLGPFDSDDENEFDVFRMAAMSEALASGVDDFGPDDFDDEEFDPMEAALLSMMMHSHMEDEDEDDEEEYSDDEY 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00516 443 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Tsu03g00516 443 Pfam RNA-binding, Nab2-type zinc finger 275 296 - -
Tsu03g00516 443 MobiDBLite consensus disorder prediction 428 443 - -
Tsu03g00516 443 CDD RING-HC_MKRN 180 241 - -
Tsu03g00516 443 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Tsu03g00516 443 Gene3D - 1 69 - -
Tsu03g00516 443 ProSiteProfiles Zinc finger C3H1-type profile. 270 299 IPR000571 GO:0046872
Tsu03g00516 443 SUPERFAMILY RING/U-box 170 247 - -
Tsu03g00516 443 ProSitePatterns Zinc finger RING-type signature. 204 213 IPR017907 -
Tsu03g00516 443 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Tsu03g00516 443 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Tsu03g00516 443 SMART c3hfinal6 270 298 IPR000571 GO:0046872
Tsu03g00516 443 SMART c3hfinal6 112 137 IPR000571 GO:0046872
Tsu03g00516 443 Pfam Zinc finger, C3HC4 type (RING finger) 180 240 IPR018957 GO:0046872
Tsu03g00516 443 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 443 - -
Tsu03g00516 443 SMART ring_2 180 240 IPR001841 -
Tsu03g00516 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 252 IPR013083 -
Tsu03g00516 443 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Tsu03g00516 443 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Tsu03g00516 443 SUPERFAMILY CCCH zinc finger 29 52 IPR036855 GO:0046872
Tsu03g00516 443 PANTHER MAKORIN-RELATED 1 443 IPR045072 -
Tsu03g00516 443 MobiDBLite consensus disorder prediction 424 443 - -
Tsu03g00516 443 Pfam CCCH-type zinc finger 33 52 IPR041367 -
Tsu03g00516 443 ProSiteProfiles Zinc finger RING-type profile. 180 241 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00516 Tsu-Chr3 4372348 4377594 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu03g00516 zf-C3HC4 8e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00516 K15687 - gmx:100788886 636.336