Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu03g00516 | ATGTCCACAAGGGTTTGCAAGTTCTATGCCAGAGGGGTATGTTTGAAAGGGGAGCAATGTGATTTTGCACATCAAAGAAAGGATACTCCAGTTGATGTTTGCTCTTATTATCAGAAAGGGTCTTGTGCTTATGGTAGTCGATGCAGATATAAGCATGTCAGAGCTTCTCAAGCATCATCTTCTGCGTCTATGGTTTCAGATTCTGCTAAAGTAGCATCAAATTGGGTTCCTAAGGTTACTAAGGCTCCTGCACCTGACAAGCGTGCCGTAAGGAGTTTACAACGCAAGCATCAGGACTTTAGTGATGTTGGTGAATCTAGTACTGCAAGTGCTAGGCCGCATGATATATTTTGTACATTTGCTGCAGCCAATTGCCCCCTTGGAGATGGATGTTCTCGTGTTCATGGAAATCAATGCTTGTACTGCAGAAAATATTGCTTGCATCCGACTGATAAAAAGGAAAAGGAGAGTCATTTGAGGACTTGtgacaaaaaggaaaagtaCCTTCTGGCTTTGAAAAATAGTGAAGAAATAGAATGCAATGTTTGTCTGGAGCGTGTCCTTTCCAAACCCAAACCATCAGAATGTAAGTTTGGGCTGCTTCCAGAATGCGATCATGCTTTCTGCTTGTCATGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGAATGGAAATCAGTAGTAATTCCAATACTGTGAGAACCTGTCCTGTTTGCCGCAAACTGTCATATTTTGTCATTCCAAGTGGTATTTGGTTTACTACAAAGGAAGAAAAACAGGAAATTATTGATAACTACAAGGCAAACTGCAGATTGATTGATTGCAAACATTTTGACTCTGGAAATGGGAATTGTCCATTTGGAGCTAGTTGTTTCTACAAGCATACAGTGAAGCCTGGGTCATACACATGGGTAAACCGCAGGCCACCACCTCAACGTAGACCAAACAATTATGATATGTATGATGTGTTGGATATGCTCAGTGAAGTTGATTTATCAAGTGGAGAATTTTACAACATCATGAGAGACTCCGAGTTTTTTGACGGGATGGATCCATTTGAAATGATGGCTTTGTCAGATTCGCTTGCTGGTGGTTCGGGTCCTTGTTTGGGTCCTTTTGATTCTGACGACGAGAATGAATTTGATGTTTTTCGAATGGCTGCTATGTCAGAGGCCCTGGCTTCTGGGGTGGATGATTTTGGCCcggatgattttgatgatgaagaatttgatCCTATGGAGGCAGCTTTGTTATCAATGATGATGCATTCTCATATGGAAGACGAAGATGAAGACGACGAAGAAGAATACAGTGACGATGAATATTAG | 1332 | 0.4069 | MSTRVCKFYARGVCLKGEQCDFAHQRKDTPVDVCSYYQKGSCAYGSRCRYKHVRASQASSSASMVSDSAKVASNWVPKVTKAPAPDKRAVRSLQRKHQDFSDVGESSTASARPHDIFCTFAAANCPLGDGCSRVHGNQCLYCRKYCLHPTDKKEKESHLRTCDKKEKYLLALKNSEEIECNVCLERVLSKPKPSECKFGLLPECDHAFCLSCIRNWRNSAPTSGMEISSNSNTVRTCPVCRKLSYFVIPSGIWFTTKEEKQEIIDNYKANCRLIDCKHFDSGNGNCPFGASCFYKHTVKPGSYTWVNRRPPPQRRPNNYDMYDVLDMLSEVDLSSGEFYNIMRDSEFFDGMDPFEMMALSDSLAGGSGPCLGPFDSDDENEFDVFRMAAMSEALASGVDDFGPDDFDDEEFDPMEAALLSMMMHSHMEDEDEDDEEEYSDDEY | 443 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu03g00516 | 443 | Pfam | RNA-binding, Nab2-type zinc finger | 6 | 24 | - | - | |
Tsu03g00516 | 443 | Pfam | RNA-binding, Nab2-type zinc finger | 275 | 296 | - | - | |
Tsu03g00516 | 443 | MobiDBLite | consensus disorder prediction | 428 | 443 | - | - | |
Tsu03g00516 | 443 | CDD | RING-HC_MKRN | 180 | 241 | - | - | |
Tsu03g00516 | 443 | ProSiteProfiles | Zinc finger C3H1-type profile. | 28 | 55 | IPR000571 | GO:0046872 | |
Tsu03g00516 | 443 | Gene3D | - | 1 | 69 | - | - | |
Tsu03g00516 | 443 | ProSiteProfiles | Zinc finger C3H1-type profile. | 270 | 299 | IPR000571 | GO:0046872 | |
Tsu03g00516 | 443 | SUPERFAMILY | RING/U-box | 170 | 247 | - | - | |
Tsu03g00516 | 443 | ProSitePatterns | Zinc finger RING-type signature. | 204 | 213 | IPR017907 | - | |
Tsu03g00516 | 443 | SMART | c3hfinal6 | 2 | 26 | IPR000571 | GO:0046872 | |
Tsu03g00516 | 443 | SMART | c3hfinal6 | 28 | 54 | IPR000571 | GO:0046872 | |
Tsu03g00516 | 443 | SMART | c3hfinal6 | 270 | 298 | IPR000571 | GO:0046872 | |
Tsu03g00516 | 443 | SMART | c3hfinal6 | 112 | 137 | IPR000571 | GO:0046872 | |
Tsu03g00516 | 443 | Pfam | Zinc finger, C3HC4 type (RING finger) | 180 | 240 | IPR018957 | GO:0046872 | |
Tsu03g00516 | 443 | PANTHER | MAKORIN RING-ZINC-FINGER PROTEIN | 1 | 443 | - | - | |
Tsu03g00516 | 443 | SMART | ring_2 | 180 | 240 | IPR001841 | - | |
Tsu03g00516 | 443 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 170 | 252 | IPR013083 | - | |
Tsu03g00516 | 443 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1 | 27 | IPR000571 | GO:0046872 | |
Tsu03g00516 | 443 | SUPERFAMILY | CCCH zinc finger | 3 | 25 | IPR036855 | GO:0046872 | |
Tsu03g00516 | 443 | SUPERFAMILY | CCCH zinc finger | 29 | 52 | IPR036855 | GO:0046872 | |
Tsu03g00516 | 443 | PANTHER | MAKORIN-RELATED | 1 | 443 | IPR045072 | - | |
Tsu03g00516 | 443 | MobiDBLite | consensus disorder prediction | 424 | 443 | - | - | |
Tsu03g00516 | 443 | Pfam | CCCH-type zinc finger | 33 | 52 | IPR041367 | - | |
Tsu03g00516 | 443 | ProSiteProfiles | Zinc finger RING-type profile. | 180 | 241 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu03g00516 | Tsu-Chr3 | 4372348 | 4377594 | Tandem |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Tsu03g00516 | zf-C3HC4 | 8e-07 | CL0229 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu03g00516 | K15687 | - | gmx:100788886 | 636.336 |