Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00515 ATGCAAATTTGGTTAAATGTGGTGCCTCATGAAGCGAGGAATAATTTTTTCCATGGAGATTTGCATGTTTGGATTAATTATAATCTTAATTATTGTTGGTATGGAGCTAATGGTGTTCATTGGAGAGATTATTGGGCGATGGGGTGTCATAGATTATGGGTGTGGCACAACCAAAAGCTTCATGAAGAGGAGTTTCAGAGACCACACCATCCGGCTAATAGTGCTATTGTGGAATGGGAGCACGATGTGAGTTTAATTGGATGGAAACCACCAAATATAGGTGTGGTTAAATTAAATACCGATGGTGCTTGTAAAGATGATAGAACAACTGGATGTGGCGAACTTTGGAGTGTTTTTGAAGGATTGAAGTATGCACGCAGAATTGGTTATAATGTAGTTGAGTTAAATGCGGATTCTATGGTGGTCAAACAAGCTATTAAGTCAGGAAAGGCTAGTAATTTGTCAGGACAAACTCTGGTGAAGAACATTCGTCGATTGCTGGATTTAACTTGGGAAGTTACCGTGAAGCATTCTTATAGAGAGGCAAATGCGTGTGCGGTTGCTTTAGCAAATATTGGTTGTTCGCTAGATTATAATATTGTTTTCTATGATACTCCTCCTATGCATATTAGGGTTCTTTGTAAGTTCTTTGCTCATGGAGCGTGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGATTGGAAAGCTCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTTTGTGCTTATGGTAGTCGCTGTAGGTATGATCATGTCAAAGCTGCTCGATCACCGTCCTCTACTCCATCTTCTTCAATAATCGAACACCAGCCCCTTGTTTCAGAATCTGCTGTACTTGGTAATACGAGAATTACATCGAACAATGTTGCTACAGCTGCAGAATTTTCTCTTTTCAACACTCCTTATGTTGTTCCGAGTGAACCAGCCTGGAATCAAGAATCTGCAAATCATGACTTCTTAAGGGAAGATGATGTTGGTCAATTGTTAATTACTTCACCTTCTGATATTCCGATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGAGAACAATGTCCTCATGTACACGGAGATTTATGCCCTTCCTGCGGAAGGCATTGCTTGCATCCTTTCCGTCCtgaagaaagagaagaacataTGAAAAGTTGTGAAAATAAGCAAAAGCATCTCGAGGCATTGAAAAAAAGTCAAGAAGTTGAATGCTGTGTTTGCCTGGAACGTGTTCTTTCAAAGCCTACAGCAGCTGAACGTAAGTTTGGTGTGCTATCTGAATGTGACCATCCCTTTTGCATATCCTGTATTAGAAATTGGCGTAGTAGCAACCCAACATTAGGGATGGATGTGAATAGCACATTGCGGGCTTGTCCCATCTGTCGCAAGCTATCTTACTTTGTCGTTCCAAGTGTTATTTGGTATGCTACAAGTGAAGAAAAACAGGAAATCGTTAATACCTACAAGGCAAAGCTCAAGTCAATCGACTGCAAGCATTTTGACTTTGGGGATGGAAACTGCCCTTTTGGAACTAGCTGCTTCTACAAGCATGCATATCGAGATGGCCGTCTTGAGGAGGTAACTTTGCGACATCTTGGGGCTGCAGATGGTGACACAATAATTGCCAAAGATATCAGGTTGTCGGATTTCCTTGCTACCATGCGTTTAAGTTGA 1695 0.4059 MQIWLNVVPHEARNNFFHGDLHVWINYNLNYCWYGANGVHWRDYWAMGCHRLWVWHNQKLHEEEFQRPHHPANSAIVEWEHDVSLIGWKPPNIGVVKLNTDGACKDDRTTGCGELWSVFEGLKYARRIGYNVVELNADSMVVKQAIKSGKASNLSGQTLVKNIRRLLDLTWEVTVKHSYREANACAVALANIGCSLDYNIVFYDTPPMHIRVLCKFFAHGACLKGEHCEFSHDWKAPPNNICTFYQKGVCAYGSRCRYDHVKAARSPSSTPSSSIIEHQPLVSESAVLGNTRITSNNVATAAEFSLFNTPYVVPSEPAWNQESANHDFLREDDVGQLLITSPSDIPICSFAAAGNCPRGEQCPHVHGDLCPSCGRHCLHPFRPEEREEHMKSCENKQKHLEALKKSQEVECCVCLERVLSKPTAAERKFGVLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVVPSVIWYATSEEKQEIVNTYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGRLEEVTLRHLGAADGDTIIAKDIRLSDFLATMRLS 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00515 564 Gene3D - 204 238 - -
Tsu03g00515 564 SUPERFAMILY CCCH zinc finger 210 233 IPR036855 GO:0046872
Tsu03g00515 564 PANTHER MAKORIN-RELATED 208 561 IPR045072 -
Tsu03g00515 564 Gene3D - 97 195 IPR036397 GO:0003676
Tsu03g00515 564 SUPERFAMILY RING/U-box 400 475 - -
Tsu03g00515 564 SMART ring_2 411 468 IPR001841 -
Tsu03g00515 564 SMART c3hfinal6 498 526 IPR000571 GO:0046872
Tsu03g00515 564 SMART c3hfinal6 343 368 IPR000571 GO:0046872
Tsu03g00515 564 SMART c3hfinal6 209 234 IPR000571 GO:0046872
Tsu03g00515 564 SMART c3hfinal6 237 262 IPR000571 GO:0046872
Tsu03g00515 564 CDD RNase_H_like 98 191 IPR044730 -
Tsu03g00515 564 ProSiteProfiles Zinc finger C3H1-type profile. 498 527 IPR000571 GO:0046872
Tsu03g00515 564 Pfam Zinc finger, C3HC4 type (RING finger) 411 468 IPR018957 GO:0046872
Tsu03g00515 564 ProSiteProfiles Zinc finger C3H1-type profile. 236 263 IPR000571 GO:0046872
Tsu03g00515 564 SUPERFAMILY CCCH zinc finger 239 260 IPR036855 GO:0046872
Tsu03g00515 564 ProSiteProfiles Zinc finger C3H1-type profile. 342 369 IPR000571 GO:0046872
Tsu03g00515 564 Pfam Reverse transcriptase-like 104 191 IPR002156 GO:0003676|GO:0004523
Tsu03g00515 564 ProSiteProfiles Zinc finger RING-type profile. 411 469 IPR001841 -
Tsu03g00515 564 Coils Coil 390 410 - -
Tsu03g00515 564 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 69-LIKE 208 561 - -
Tsu03g00515 564 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 474 IPR013083 -
Tsu03g00515 564 ProSitePatterns Zinc finger RING-type signature. 435 444 IPR017907 -
Tsu03g00515 564 SUPERFAMILY Ribonuclease H-like 95 195 IPR012337 -
Tsu03g00515 564 CDD RING-HC_MKRN 411 469 - -
Tsu03g00515 564 Pfam RNA-binding, Nab2-type zinc finger 503 525 - -
Tsu03g00515 564 ProSiteProfiles Zinc finger C3H1-type profile. 213 235 IPR000571 GO:0046872
Tsu03g00515 564 ProSiteProfiles RNase H type-1 domain profile. 92 195 IPR002156 GO:0003676|GO:0004523
Tsu03g00515 564 Pfam CCCH-type zinc finger 241 260 IPR041367 -
Tsu03g00515 564 Pfam CCCH-type zinc finger 213 233 IPR041367 -
Tsu03g00515 564 Gene3D - 239 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00515 Tsu-Chr3 4365101 4372123 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu03g00515 RVT_3 5.9e-13 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00515 K15687 - gmx:100787817 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00515 03 4365101 4372123 Tsu03g00515 03 4365101 4372123 ECH