Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00503 atgcAAATGAGGAAACCTGATTTGATTATGgcaaaagaaaacaacaatgtTAACAAGAGCAAGTTAAGGAAAGGGTTATGGTCACCTGAGGAAGATGAGAAGTTGATAAGGTACATGATAACAAAAGGACAAGGTTGTTGGAGTGACATTGCTAGGAATGCAGGTCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGTTGGATTAATTACTTGAGACCCGATCTTAAACGCGGTGCATTTTCGCCTCAAGAGGAAGAACTCATCATTCATTTTCACTCTATTCTTGGCAACAGATGGTCTCAGATTGCAGCACGCCTCCCTGGTCGCACTGACAATGAAATAAAGAATTTTTGGAATTCTACACTGAAGAAGAGATTGAAAACCAACAATAACTCCACTGCATCCCCAAACAATAGTGACTCATCAGATCAACCCATATTAGATGTTTTTGATATGAAAAATAATGTGATCATGCCAATTAATGAGCAAGAACTCATGACATTGTGCATGGACTCCTCATCATcaacttcatcatcatccatgcAATCCATGCACATGCATGCCATGGTTTTAGCTGATCAATTTGATCCATTTTCCTTGATGTCTAATAATCATTATGACATGACAACAAGTTTCCATGATCATGACATGCCAACAAgcttaacacaacaaattggcaTGGTTAATGATATTGGGCTTAGTGATGATTATGGGATTTTAGATGCTAACAAAATGGGTTTattagaaaatgattttgaaCTTCCTCCACTAGAAAGTAGAATTAGCATTGAAAACAAGAGTGTTCCAATTGATCATAATGTGAAAAGCCATATCAACCACTTCAATAATAGTTGCTTCAATAATACTAATCACATTCAAAATTCCAATGTAGAGGACTTGTTTGGATTTGGAAATCATGGGCAAGTGGAAAACTTAAGAATGGGAGAATGGGATTTAGAGGGTTTAATGCAAGACATATCCTATTTACCTCCCCTTGATTTTCAAGTTTAA 1011 0.3412 MQMRKPDLIMAKENNNVNKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKTNNNSTASPNNSDSSDQPILDVFDMKNNVIMPINEQELMTLCMDSSSSTSSSSMQSMHMHAMVLADQFDPFSLMSNNHYDMTTSFHDHDMPTSLTQQIGMVNDIGLSDDYGILDANKMGLLENDFELPPLESRISIENKSVPIDHNVKSHINHFNNSCFNNTNHIQNSNVEDLFGFGNHGQVENLRMGEWDLEGLMQDISYLPPLDFQV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00503 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Tsu03g00503 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 71 IPR017930 -
Tsu03g00503 336 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
Tsu03g00503 336 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Tsu03g00503 336 Pfam Myb-like DNA-binding domain 77 121 IPR001005 -
Tsu03g00503 336 Gene3D - 21 77 - -
Tsu03g00503 336 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Tsu03g00503 336 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Tsu03g00503 336 PANTHER MYB DOMAIN PROTEIN 55 3 336 - -
Tsu03g00503 336 CDD SANT 79 122 IPR001005 -
Tsu03g00503 336 SMART sant 76 124 IPR001005 -
Tsu03g00503 336 SMART sant 23 73 IPR001005 -
Tsu03g00503 336 CDD SANT 27 71 IPR001005 -
Tsu03g00503 336 PANTHER TRANSCRIPTION FACTOR MYB83 3 336 - -
Tsu03g00503 336 Gene3D - 78 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00503 Tsu-Chr3 4271386 4274112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00503 1 336 MYB Transcription Factor Family AT3G08500 45.989 5.28e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu03g00503 Myb_DNA-binding 4.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00503 K09422 - gmx:100813660 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00503 03 4271386 4274112 Tsu03g00503 03 4271386 4274112 ECH