Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00497 ATGGCAGCACTGCGAGACATTTCTGCAACCTTGCTTTATCGCTCAAAACCGCACACTTCTCTTTTTCAACGCCTCTTCCTTCGTAGAAAGACTTCCAAGATTTTTGTTAAAGGTTTAGCATTTTCTACTACAGAAGAGAAATTAGCCGAAGCTTTTTCTCAATACGGAAATGTTCTCAAAGCTGATGTAGTATTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTGCTGAGGAGGAAGGAGCCCGCAAGGCACAGATTGGCATGAATGGAAAGATATTACACGGACGTGTCTTATATGTAGACATAGATAACAAGGAGAAGAAAACTTAG 345 0.3971 MAALRDISATLLYRSKPHTSLFQRLFLRRKTSKIFVKGLAFSTTEEKLAEAFSQYGNVLKADVVLNKAKNRSKGFGYVTFAEEEGARKAQIGMNGKILHGRVLYVDIDNKEKKT 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00497 114 SUPERFAMILY RNA-binding domain, RBD 29 111 IPR035979 GO:0003676
Tsu03g00497 114 PANTHER TRANSFORMER-2-RELATED 11 109 - -
Tsu03g00497 114 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Tsu03g00497 114 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 103 IPR000504 GO:0003723
Tsu03g00497 114 SMART rrm1_1 33 106 IPR000504 GO:0003723
Tsu03g00497 114 Gene3D - 14 114 IPR012677 -
Tsu03g00497 114 PANTHER RNA RECOGNITION MOTIF 11 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00497 Tsu-Chr3 4210202 4213541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00497 26 112 Eukaryotic Initiation Factors Gene Family AT1G22760 35.632 1.24e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00497 - K13195 gmx:100527061 152.14