Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00479 ATGGATGGTTCTGTGAGAGTAATCTCCACGAGTACAATCCAAGCACCAAGTGACAATAATAATGGCAACTCAAGTGATTTTCAGAAAATTCATTTAACACCATGGGATCTCCAATTCCTCCCACTTGAAACCATCCAAAAAGGCCTTCTTTTCCACAACCCCATTGACTCATCAAAAGACCAATTAATCCATCATTTGAAACAAACTCTGTCCTCCACTCTTTCCTTCTTTCCGCCTCTTGCTGGTCGTCTTGTAATAACTCAACACgacgaaaaagaagaagataacaTCGCCTCATGTTTCATCACTTGCAACAACATTGGTGCACTCTTCGTCCATGCCACAACAGAAAACACTACCGTTTCTGATATCATTACTCCATCCAACAACTACATTGTACCTCCTATTGTCTACTCTTTTTTCCCTCTCAACGGCGTCAAAAACTGGGAAGCCACTTCAAAGCCAATTTTGGCCGTTCAAGTAACGGAGTTACTTGATGGCCTCTTTATTGGCTTTACAATCAACCACTTAGCATCCGATGGTAAGTCGTTTTGGCATTTCATCAATTCTTGGTCGCAAATCTCAAGAGGTGTTTCTATCAACAAACTCCCTTCACTTAAACGTTGGTTTCCAACTAATGTTAATAATGAAATTCCCTTACGTTTCCCTTTCACAACTGAATTCGTCCAAAGCTCCAACTCCAACAACTTATTCGAAGGAGTATTCCATTTCACAAAGGAGAAAATCGCGCAACTAAAATCCAAAGCCAACacagaaacaaaaaatgagAATAATATTAACATATCATCGCTTCAAGCGGTATTAGCTCATGTTTTGCGTTCTATTGTTCGTTGCGAAAAACTTGATCCAGAACAAGAGGTTCTTTACATCTTGGCAATAGGTGTTAGAGAAAGGATGATTCCTCCGCTTGATGAGAATTATTTCGGAAACGCCACAATTGTTTGTGGTTTTACGATGAAAGCGGGGGAAATTCTAGAGTGTGGGAATCTTGGAAAGGTTGCTTTAGAGATGAACAAGACAATTTCTTTACATTCTAAtgatgagaaaataaaaaacaattatgagTTGTGGTTGAGAAAACCAAAGTTGCTTACGGGTGGTGATTTGACTCGTTGTTATTCCTTGACAACAAGCAGTTCTCCGAGGTTTGATGTTTATGGTAACGATTTTGGTTGGGGAAAGCCGGTTGCTGTTCGATGCGGAGGTGCTAACAAAAGGAAAGGGAAGATTACTGTGTTTGCTGGAGCTGAAGAGGGTAGTATTGACATTGTACCTTGTCTTCCTTACCAGATTTTGGAGGCCATGGGAAATGACAATGAGTTCATGCATGGTGACTTAAGTTAA 1365 0.3868 MDGSVRVISTSTIQAPSDNNNGNSSDFQKIHLTPWDLQFLPLETIQKGLLFHNPIDSSKDQLIHHLKQTLSSTLSFFPPLAGRLVITQHDEKEEDNIASCFITCNNIGALFVHATTENTTVSDIITPSNNYIVPPIVYSFFPLNGVKNWEATSKPILAVQVTELLDGLFIGFTINHLASDGKSFWHFINSWSQISRGVSINKLPSLKRWFPTNVNNEIPLRFPFTTEFVQSSNSNNLFEGVFHFTKEKIAQLKSKANTETKNENNINISSLQAVLAHVLRSIVRCEKLDPEQEVLYILAIGVRERMIPPLDENYFGNATIVCGFTMKAGEILECGNLGKVALEMNKTISLHSNDEKIKNNYELWLRKPKLLTGGDLTRCYSLTTSSSPRFDVYGNDFGWGKPVAVRCGGANKRKGKITVFAGAEEGSIDIVPCLPYQILEAMGNDNEFMHGDLS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00479 454 Gene3D - 226 443 IPR023213 -
Tsu03g00479 454 Gene3D - 3 218 IPR023213 -
Tsu03g00479 454 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 4 450 - -
Tsu03g00479 454 PANTHER ANTHRANILATE N-HYDROXYCINNAMOYL/BENZOYLTRANSFERASE-LIKE PROTEIN 4 450 - -
Tsu03g00479 454 MobiDBLite consensus disorder prediction 1 25 - -
Tsu03g00479 454 Pfam Transferase family 28 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00479 Tsu-Chr3 4054176 4055840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00479 49 434 Monolignol Biosynthesis Gene Families AT5G48930 25.495 2.53e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00479 - - gmx:100500257 486.878