Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00478 ATGGTTAGCATTAAAAGTTCTTACACTGTGATTCCAGAAGAATCAACACCACAGGGTCGTTTATGGCTCTCTGACAAAGATCAAGTAGCATCTCAACGCCACACACCCACCATTTACatttacaaaccaaaacagaacCAAGAAAATGTCATAGAAACACTAAAGAATTCTCTTAGCAAAATTCTAGTTCACTACTATCCTATAGCTGGTAGATTGTGTTATACAAATGAAGAAGGTGGTAGTGGTAGAATAGAAGTGAATCTCAATGCAAAAGGAGCCATTTTGGTTGAAGCTGAAACCACAAAAACCATTCATGATTATGGTGACTTTTCACCTTCTGATTCAACCAAAGAGCTTGTTCCAATAGTCAATTACAATCAACCTATTGAAGAAATTCCAATTCTTCTTGTGCAACTCACAAGTTTCAAAAACAACCAAGGCTTTGCAATTGGTGTTGCTTTATCCCATTCTTTGACAGATGGAATTGGAGCTTGTGGATTCATCACCTCATGGGCGAAAATAGCATGTGGCGAAACCCTAGAGCCTAATGAATTACCATTTCTTGATAGAACAATAATCAAATTTTCACACACACCATTGAAAGAACCATGTTTTGAGCACATGGAATTGCAGCCTCTTCCACTCATTCTAGGAAGAAAAGAtacaagtgaagaaagaaagaagaaaacaacAGCAACATTATTGAAACTCTCACATGATCATGTtgagaaattgaagaaaaaagcCAATGAATTTTTATCAATGAAGAAAAAAGATCAAGAGTCAAGGCCTTTTAGTAAATTTGAAGCAATTGGTGCACATATATGGAGATGTGCATCTAAGGCACGTGGTCTTGAATATAATCAAGAAAGTGTTGTTAGATTTCATGCTGATATTAGAAAAAGAATTATTCCACCACTTCCTCAAAACTTTTTTGGTAATGCTTTGGTACTAACTGCAGCAAAAGTCTATATTGGAGAAATCACATCAAAGCCTTTAGGCTTTGCagcagaaaagataagggaaGCAACTAAGCTTGTTAAAGATGAGTTTATAAAATCACAAATTGATGTTATTAGGAGTTTTGAAAATATGGATGATGCAAGGGAATTATTTTTTGGTGATGAAACTGAAAATGCACCATATTTTGGGAAtccaaattttcaattaactAGTTGGATGGGAATGCCATTTTATGAAGCTGATTTTGGATGGGGGAAGCCTATTTTCTTTGGATTTGCTTGTGTGTCTCCACATGATAGGGCATTCATATATCTTAGTCCTGATGGAGATGGATCTGTTATTGTGTGTTTGCATTTTCAGATTGCACATTTGGAGCTTTTCAACAAGTTCTTCTATGAAGATATATGA 1371 0.3319 MVSIKSSYTVIPEESTPQGRLWLSDKDQVASQRHTPTIYIYKPKQNQENVIETLKNSLSKILVHYYPIAGRLCYTNEEGGSGRIEVNLNAKGAILVEAETTKTIHDYGDFSPSDSTKELVPIVNYNQPIEEIPILLVQLTSFKNNQGFAIGVALSHSLTDGIGACGFITSWAKIACGETLEPNELPFLDRTIIKFSHTPLKEPCFEHMELQPLPLILGRKDTSEERKKKTTATLLKLSHDHVEKLKKKANEFLSMKKKDQESRPFSKFEAIGAHIWRCASKARGLEYNQESVVRFHADIRKRIIPPLPQNFFGNALVLTAAKVYIGEITSKPLGFAAEKIREATKLVKDEFIKSQIDVIRSFENMDDARELFFGDETENAPYFGNPNFQLTSWMGMPFYEADFGWGKPIFFGFACVSPHDRAFIYLSPDGDGSVIVCLHFQIAHLELFNKFFYEDI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00478 456 Pfam Transferase family 1 453 - -
Tsu03g00478 456 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 4 456 - -
Tsu03g00478 456 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 456 - -
Tsu03g00478 456 Gene3D - 218 455 IPR023213 -
Tsu03g00478 456 Gene3D - 1 212 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00478 Tsu-Chr3 4051555 4053396 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00478 2 454 Monolignol Biosynthesis Gene Families AT5G48930 34.945 3.71e-94 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00478 K13065 - gmx:100778626 552.362